Evidence map›Paper›PMID 24663084›Full record

ArticleInternational journal of molecular sciences2014

Application of computational methods for the design of BACE-1 inhibitors: validation of in silico modelling.

Marek Bajda, Jakub Jończyk, Barbara Malawska, Sławomir Filipek

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Marek BajdaFaculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland. marek.bajda@chem.uw.edu.pl.
Jakub JończykDepartment of Physicochemical Drug Analysis, Faculty of Pharmacy, Medical College, Jagiellonian University, Medyczna 9, 30-688 Cracow, Poland. jakub.jonczyk@uj.edu.pl.
Barbara MalawskaDepartment of Physicochemical Drug Analysis, Faculty of Pharmacy, Medical College, Jagiellonian University, Medyczna 9, 30-688 Cracow, Poland. barbara.malawska@uj.edu.pl.
Sławomir FilipekFaculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland. sfilipek@chem.uw.edu.pl.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

β-Secretase (BACE-1) constitutes an important target for search of anti-Alzheimer's drugs. The first inhibitors of this enzyme were peptidic compounds with high molecular weight and low bioavailability. Therefore, the search for new efficient non-peptidic inhibitors has been undertaken by many scientific groups. We started our work from the development of in silico methodology for the design of novel BACE-1 ligands. It was validated on the basis of crystal structures of complexes with inhibitors, redocking, cross-docking and training/test sets of reference ligands. The presented procedure of assessment of the novel compounds as β-secretase inhibitors could be widely used in the design process.

Indexed as

Computer-Aided DesignDrug DesignAmyloid Precursor Protein SecretasesBinding SitesCatalytic DomainComputational BiologyComputer SimulationCrystallography, X-RayModels, MolecularProtease InhibitorsProtein BindingProtein Structure, TertiaryReproducibility of ResultsAmyloid Precursor Protein SecretasesProtease Inhibitors

Identifiers

PMID24663084
PMCPMC3975444

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.