Evidence map›Paper›PMID 24662426›Full record

ArticleNature communications2014

Molecular basis for erythromycin-dependent ribosome stalling during translation of the ErmBL leader peptide.

Stefan Arenz, Haripriya Ramu, Pulkit Gupta, Otto Berninghausen, Roland Beckmann, Nora Vázquez-Laslop, Alexander S Mankin, Daniel N Wilson

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 145 citations in OpenAlex.

  1. Review
  2. Approaches for Studying Context Specificity of Translation Inhibitor Action.International journal of molecular sciences · 2026
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  11. HflX-mediated drug resistance through ribosome splitting and rRNA disordering in mycobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Article
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  15. Paenilamicins from the honey bee pathogenbioRxiv : the preprint server for biology · 2024
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  17. Whole-Genome Sequencing of anInfection and drug resistance · 2024
    Article
  18. A Review of the Resistance Mechanisms forMedicina (Kaunas, Lithuania) · 2023
    Review
  19. Practical Synthesis ofACS chemical biology · 2023
    Article
  20. Review

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Stefan ArenzGene Center, Department for Biochemistry, University of Munich, Feodor-Lynen Strasse 25, 81377 Munich, Germany.
Haripriya RamuCenter for Pharmaceutical Biotechnology, University of Illinois, Chicago, Illinois 60607, USA.
Pulkit GuptaCenter for Pharmaceutical Biotechnology, University of Illinois, Chicago, Illinois 60607, USA.
Otto BerninghausenGene Center, Department for Biochemistry, University of Munich, Feodor-Lynen Strasse 25, 81377 Munich, Germany.
Roland Beckmann1] Gene Center, Department for Biochemistry, University of Munich, Feodor-Lynen Strasse 25, 81377 Munich, Germany [2] Center for integrated Protein Science Munich (CiPSM), University of Munich, Feodor-Lynen Strasse 25, 81377 Munich, Germany.
Nora Vázquez-LaslopCenter for Pharmaceutical Biotechnology, University of Illinois, Chicago, Illinois 60607, USA.
Alexander S MankinCenter for Pharmaceutical Biotechnology, University of Illinois, Chicago, Illinois 60607, USA.
Daniel N Wilson1] Gene Center, Department for Biochemistry, University of Munich, Feodor-Lynen Strasse 25, 81377 Munich, Germany [2] Center for integrated Protein Science Munich (CiPSM), University of Munich, Feodor-Lynen Strasse 25, 81377 Munich, Germany.
University of Illinois Chicago · USCenter for Integrated Protein Science Munich · DE

Funding

Programmed translation arrest controlled by nascent peptides and antibioticsR01GM104370 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MANKIN, ALEXANDER S, VAZQUEZ-LASLOP, NORA · 2012 to 2015
$1.2M
NIGMS NIH HHS GM104370NIGMS NIH HHS R01 GM104370
6 · The paper itself

Abstract

In bacteria, ribosome stalling during translation of ErmBL leader peptide occurs in the presence of the antibiotic erythromycin and leads to induction of expression of the downstream macrolide resistance methyltransferase ErmB. The lack of structures of drug-dependent stalled ribosome complexes (SRCs) has limited our mechanistic understanding of this regulatory process. Here we present a cryo-electron microscopy structure of the erythromycin-dependent ErmBL-SRC. The structure reveals that the antibiotic does not interact directly with ErmBL, but rather redirects the path of the peptide within the tunnel. Furthermore, we identify a key peptide-ribosome interaction that defines an important relay pathway from the ribosomal tunnel to the peptidyltransferase centre (PTC). The PTC of the ErmBL-SRC appears to adopt an uninduced state that prevents accommodation of Lys-tRNA at the A-site, thus providing structural basis for understanding how the drug and the nascent peptide cooperate to inhibit peptide bond formation and induce translation arrest.

Indexed as

Models, MolecularAmino Acid SequenceBase SequenceCryoelectron MicroscopyErythromycinGene Expression Regulation, BacterialMethyltransferasesMolecular Sequence DataOligonucleotidesProtein BiosynthesisProtein Sorting SignalsRibosomesErythromycinMethyltransferasesOligonucleotidesProtein Sorting SignalsrRNA (adenosine-O-2'-)methyltransferase

Identifiers

PMID24662426
PMCPMC4133097
OpenAlexW2050610109

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.