Evidence map›Paper›PMID 24662387›Full record

ReviewNature reviews. Immunology2014

Democratizing systems immunology with modular transcriptional repertoire analyses.

Damien Chaussabel, Nicole Baldwin

Registry-linked trialAbstract readReview
In one paragraph

Review in Nature reviews. Immunology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04855513 (Prevention of Pre-eclampsia Using Metformin), which is not on this map. Cited by 136 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
136citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04855513 naunknown statusnot on this mapstarted 2022, after this paper: background citation

Prevention of Pre-eclampsia Using Metformin: a Randomized Control Trial

TypeinterventionalSponsorHamad Medical CorporationRan2022 to 2023Enrolled414ConditionsPreeclampsia, Preeclampsia Severe, High Risk Pregnancy, EclampsiaArmsMetformin
3 · Its place in the literature

Who cites it

136 citing papers in PubMed, 1 synthesis or guideline pooled it.

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  13. GIDISdb: a gene expression database for exploring human immune responses in infectious diseases.Database : the journal of biological databases and curation · 2026
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76 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Damien ChaussabelBenaroya Research Institute Systems Immunology Division, 1201 Ninth Street, Seattle, Washington, 98101-2795, USA.
Nicole BaldwinBaylor Institute for Immunology Research, Baylor Research Institute, 3434 Live Oak St, Dallas, Texas, 75204, USA.

Funding

Targeting Dendritic Cells for Enhanced Musocal ImmunityU19AI057234 · NIAID · BAYLOR RESEARCH INSTITUTE · PI UENO, HIDEKI · 2003 to 2013
$49.2M
Vaccine Induced Activation of T Follicular Helper Cell SubsetsU19AI089987 · NIAID · BAYLOR RESEARCH INSTITUTE · PI PASCUAL, MARIA VIRGINIA · 2010 to 2015
$17.0M
Blood Transcriptional Biomarker Profiles for Category B PathogensU01AI082110 · NIAID · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI LINSLEY, PETER S · 2009 to 2013
$6.3M
GENETICS AND DNA CHEMISTRY OF PHAGE PHI X-174R01AI008998 · NIAID · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI HUTCHISON, CLYDE A. · 1985 to 1986
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MUTATIONAL ANALYSIS OF PROTEIN STRUCTURE/FUNCTIONR21AI008998 · NIAID · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI HUTCHISON, CLYDE A. · 1997 to 1997
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GENETICS, DNA CHEMISTRY AND PHAGE PHI X 174R37AI008998 · NIAID · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI HUTCHISON, CLYDE A. · 1987 to 1996
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NIAID NIH HHS U01 AI082110NIAID NIH HHS U01AI082110NIAID NIH HHS U19 AI057234NIAID NIH HHS U19‑AI057234NIAID NIH HHS U19.AI08998NIAID NIH HHS U19 AI089987NIAID NIH HHS U19‑AI089987
6 · The paper itself

Abstract

Individual elements that constitute the immune system have been characterized over the few past decades, mostly through reductionist approaches. The introduction of large-scale profiling platforms has more recently facilitated the assessment of these elements on a global scale. However, the analysis and the interpretation of such large-scale datasets remains a challenge and a barrier for the wider adoption of systems approaches in immunological and clinical studies. In this Innovation article, we describe an analytical strategy that relies on the a priori determination of co-dependent gene sets for a given biological system. Such modular transcriptional repertoires can in turn be used to simplify the analysis and the interpretation of large-scale datasets, and to design targeted immune fingerprinting assays and web applications that will further facilitate the dissemination of systems approaches in immunology.

Indexed as

AnimalsDatabases, GeneticData Interpretation, StatisticalData MiningGene Expression ProfilingGene Regulatory NetworksHumansImmunityModels, GeneticModels, ImmunologicalSystems Biology

Identifiers

PMID24662387
PMCPMC4118927

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.