Evidence map›Paper›PMID 24659532›Full record

ArticleProtein science : a publication of the Protein Society2014

Capping motifs stabilize the leucine-rich repeat protein PP32 and rigidify adjacent repeats.

Thuy P Dao, Ananya Majumdar, Doug Barrick

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Pathogenicity and functional analysis ofFrontiers in medicine · 2023
    Article
  5. Article
  6. Article
  7. Designed leucine-rich repeat proteins bind two muramyl dipeptide ligands.Protein science : a publication of the Protein Society · 2021
    Article
  8. Article
  9. Lessons from pressure denaturation of proteins.Journal of the Royal Society, Interface · 2018
    Review
  10. Article
  11. Article
  12. Article
  13. Highly polarized C-terminal transition state of the leucine-rich repeat domain of PP32 is governed by local stability.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  14. Computational design of a leucine-rich repeat protein with a predefined geometry.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Thuy P DaoT.C. Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, Maryland, 21218.
Ananya Majumdar
Doug Barrick

Funding

REPEAT-PROTEINS;STABILITY, FOLDING KINETICS &EVOLUTIONR01GM068462 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BARRICK, DOUGLAS E. · 2005 to 2025
$6.3M
NIGMS NIH HHS GM068462NIGMS NIH HHS R01 GM068462
6 · The paper itself

Abstract

Capping motifs are found to flank most β-strand-containing repeat proteins. To better understand the roles of these capping motifs in organizing structure and stability, we carried out folding and solution NMR studies on the leucine-rich repeat (LRR) domain of PP32, which is composed of five tandem LRR, capped by α-helical and β-hairpin motifs on the N- and C-termini. We were able to purify PP32 constructs lacking either cap and containing destabilizing substitutions. Removing the C-cap results in complete unfolding of PP32. Removing the N-cap has a much less severe effect, decreasing stability but retaining much of its secondary structure. In contrast, the dynamics and tertiary structure of the first two repeats are significantly perturbed, based on (1)H-(15)N relaxation studies, chemical shift perturbations, and residual dipolar couplings. However, more distal repeats (3 to C-cap) retain their native tertiary structure. In this regard, the N-cap drives the folding of adjacent repeats from what appears to be a molten-globule-like state. This interpretation is supported by extensive analysis using core packing substitutions in the full-length and N-cap-truncated PP32. This work highlights the importance of caps to the stability and structural integrity of β-strand-containing LRR proteins, and emphasizes the different contributions of the N- and C-terminal caps.

Indexed as

Intracellular Signaling Peptides and ProteinsLeucine-Rich Repeat ProteinsNuclear ProteinsProtein DenaturationProtein FoldingProteinsProtein StabilityProtein Structure, SecondaryProtein Structure, TertiaryRNA-Binding ProteinsANP32A protein, humanIntracellular Signaling Peptides and ProteinsLeucine-Rich Repeat ProteinsNuclear ProteinsProteinsRNA-Binding Proteinscapping motifsfoldingleucine-rich repeatpackingstabilityβ-strand-containing repeat proteins

Identifiers

PMID24659532
PMCPMC4093955

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.