Evidence map›Paper›PMID 24659489›Full record

ArticleJournal of experimental botany2014

The transcription factor AREB1 regulates primary metabolic pathways in tomato fruits.

Adriana Bastías, Mónica Yañez, Sonia Osorio, Vicent Arbona, Aurelio Gómez-Cadenas, Alisdair R Fernie, José A Casaretto

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
8.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 82 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Comprehensive Identification ofInternational journal of molecular sciences · 2025
    Article
  8. Review
  9. Article
  10. Article
  11. ChIP-Seq Analysis ofFoods (Basel, Switzerland) · 2023
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Review
  18. Effect of long-term drought on tomato leaves: the impact on metabolic and antioxidative response.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Adriana BastíasInstituto de Biología Vegetal y Biotecnología, Universidad de Talca, 2 Norte 685, Talca, Chile.
Mónica YañezInstituto de Biología Vegetal y Biotecnología, Universidad de Talca, 2 Norte 685, Talca, Chile.
Sonia OsorioMax-Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, D-14476 Potsdam, Germany.
Vicent ArbonaDepartament de Ciències Agràries i del Medi Natural, Universitat Jaume I, Campus Riu Sec, 12071 Castelló de la Plana, Spain.
Aurelio Gómez-CadenasDepartament de Ciències Agràries i del Medi Natural, Universitat Jaume I, Campus Riu Sec, 12071 Castelló de la Plana, Spain.
Alisdair R FernieMax-Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, D-14476 Potsdam, Germany.
José A CasarettoInstituto de Biología Vegetal y Biotecnología, Universidad de Talca, 2 Norte 685, Talca, Chile jcasaretto@utalca.cl jcasaret@uoguelph.ca.
University of Talca · CLMax Planck Institute of Molecular Plant Physiology · DEUniversitat Jaume I · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tomato fruit development is regulated both by the action of plant hormones and by tight genetic control. Recent studies suggest that abscisic acid (ABA) signalling may affect different aspects of fruit maturation. Previously, it was shown that SlAREB1, an ABA-regulated transcription factor involved in stress-induced responses, is expressed in seeds and in fruit tissues in tomato. Here, the role of SlAREB1 in regulating the expression of genes relevant for primary metabolic pathways and affecting the metabolic profile of the fruit was investigated using transgenic tomato lines. Metabolite profiling using gas chromatography-time of flight mass spectrometry (GC-TOF-MS) and non-targeted liquid chromatography-mass spectrometry (LC-MS) was performed on pericarp tissue from fruits harvested at three stages of fruit development. Principal component analysis of the data could distinguish the metabolite profiles of non-transgenic fruits from those that overexpress and down-regulate SlAREB1. Overexpression of SlAREB1 resulted in increased content of organic acids, hexoses, hexose-phosphates, and amino acids in immature green, mature green, and red ripe fruits, and these modifications correlated with the up-regulation of enzyme-encoding genes involved in primary carbohydrate and amino acid metabolism. A non-targeted LC-MS analysis indicated that the composition of secondary metabolites is also affected in transgenic lines. In addition, gene expression data revealed that some genes associated with fruit ripening are also up-regulated in SlAREB1-overexpressing lines compared with wild-type and antisense lines. Taken together, the results suggest that SlAREB1 participates in the regulation of the metabolic programming that takes place during fruit ripening and that may explain part of the role of ABA in fruit development in tomato.

Indexed as

Metabolic Networks and PathwaysAbscisic AcidAmino AcidsFruitGene Expression Regulation, PlantHexosesPlant Growth RegulatorsPlant ProteinsSolanum lycopersicumTranscription FactorsAbscisic AcidAmino AcidsHexosesPlant Growth RegulatorsPlant ProteinsTranscription FactorsAbscisic acidAREBfruit developmentfruit ripeningmetabolismtomato.

Identifiers

PMID24659489
PMCPMC4036503
OpenAlexW2172181022

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.