Evidence map›Paper›PMID 24659465›Full record

ArticleFamilial cancer2014

Intronic splicing mutations in PTCH1 cause Gorlin syndrome.

Zaynab Bholah, Miriam J Smith, Helen J Byers, Emma K Miles, D Gareth Evans, William G Newman

Abstract read
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In one paragraph

Article in Familial cancer, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Article
  4. Review
  5. Genomic profiling of late-onset basal cell carcinomas from two brothers with nevoid basal cell carcinoma syndrome.Journal of the European Academy of Dermatology and Venereology : JEADV · 2021
    Article
  6. Article
  7. Article
  8. Ocular manifestations in Gorlin-Goltz syndrome.Orphanet journal of rare diseases · 2019
    Article
  9. Review
  10. Article
  11. A novel truncating mutation of PTCH1 in a Chinese family with Gorlin syndrome.International journal of clinical and experimental pathology · 2017
    Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Zaynab BholahManchester Centre for Genomic Medicine, University of Manchester, Manchester, M13 9WL, UK.
Miriam J Smith
Helen J Byers
Emma K Miles
D Gareth Evans
William G Newman
Manchester University NHS Foundation Trust · GBUniversity of Manchester · GBManchester University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gorlin syndrome is an autosomal dominant disorder characterized by multiple early-onset basal cell carcinoma, odontogenic keratocysts and skeletal abnormalities. It is caused by heterozygous mutations in the tumour suppressor PTCH1. Routine clinical genetic testing, by Sanger sequencing and multiplex ligation-dependent probe amplification (MLPA) to confirm a clinical diagnosis of Gorlin syndrome, identifies a mutation in 60-90 % of cases. We undertook RNA analysis on lymphocytes from ten individuals diagnosed with Gorlin syndrome, but without known PTCH1 mutations by exonic sequencing or MLPA. Two altered PTCH1 transcripts were identified. Genomic DNA sequence analysis identified an intron 7 mutation c.1068-10T>A, which created a strong cryptic splice acceptor site, leading to an intronic insertion of eight bases; this is predicted to create a frameshift p.(His358Alafs*12). Secondly, a deep intronic mutation c.2561-2057A>G caused an inframe insertion of 78 intronic bases in the cDNA transcript, leading to a premature stop codon p.(Gly854fs*3). The mutations are predicted to cause loss of function of PTCH1, consistent with its tumour suppressor function. The findings indicate the importance of RNA analysis to detect intronic mutations in PTCH1 not identified by routine screening techniques.

Indexed as

Basal Cell Nevus SyndromeBase SequenceDNA Mutational AnalysisFemaleHumansIntronsMaleMultiplex Polymerase Chain ReactionMutationPatched-1 ReceptorPatched ReceptorsReceptors, Cell SurfaceRNA Splice SitesRNA SplicingPatched-1 ReceptorPatched ReceptorsPTCH1 protein, humanReceptors, Cell SurfaceRNA Splice Sites

Identifiers

PMID24659465
OpenAlexW2046664759

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.