Evidence map›Paper›PMID 24658261›Full record

ArticlePloS one2014

Using natural selection to explore the adaptive potential of Chlamydomonas reinhardtii.

Marie-Mathilde Perrineau, Jeferson Gross, Ehud Zelzion, Dana C Price, Orly Levitan, Jeffrey Boyd, Debashish Bhattacharya

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Establishing Chlamydomonas reinhardtii as an industrial biotechnology host.The Plant journal : for cell and molecular biology · 2015
    Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Marie-Mathilde PerrineauDepartment of Ecology, Evolution and Natural Resources, Rutgers University, New Brunswick, New Jersey, United States of America.
Jeferson GrossDepartment of Ecology, Evolution and Natural Resources, Rutgers University, New Brunswick, New Jersey, United States of America.
Ehud ZelzionDepartment of Ecology, Evolution and Natural Resources, Rutgers University, New Brunswick, New Jersey, United States of America.
Dana C PriceDepartment of Ecology, Evolution and Natural Resources, Rutgers University, New Brunswick, New Jersey, United States of America.
Orly LevitanInstitute of Marine and Coastal Science, Rutgers University, New Brunswick, New Jersey, United States of America.
Jeffrey BoydDepartment of Biochemistry and Microbiology, Rutgers University, New Brunswick, New Jersey, United States of America.
Debashish BhattacharyaDepartment of Ecology, Evolution and Natural Resources, Rutgers University, New Brunswick, New Jersey, United States of America; Institute of Marine and Coastal Science, Rutgers University, New Brunswick, New Jersey, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Improving feedstock is critical to facilitate the commercial utilization of algae, in particular in open pond systems where, due to the presence of competitors and pests, high algal growth rates and stress tolerance are beneficial. Here we raised laboratory cultures of the model alga Chlamydomonas reinhardtii under serial dilution to explore the potential of crop improvement using natural selection. The alga was evolved for 1,880 generations in liquid medium under continuous light (EL population). At the end of the experiment, EL cells had a growth rate that was 35% greater than the progenitor population (PL). The removal of acetate from the medium demonstrated that EL growth enhancement largely relied on efficient usage of this organic carbon source. Genome re-sequencing uncovered 1,937 polymorphic DNA regions in the EL population with 149 single nucleotide polymorphisms resulting in amino acid substitutions. Transcriptome analysis showed, in the EL population, significant up regulation of genes involved in protein synthesis, the cell cycle and cellular respiration, whereas the DNA repair pathway and photosynthesis were down regulated. Like other algae, EL cells accumulated neutral lipids under nitrogen depletion. Our work demonstrates transcriptome and genome-wide impacts of natural selection on algal cells and points to a useful strategy for strain improvement.

Indexed as

Selection, GeneticAdaptation, PhysiologicalChlamydomonas reinhardtiiPolymorphism, Single Nucleotide

Identifiers

PMID24658261
PMCPMC3962425

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.