Evidence map›Paper›PMID 24658002›Full record

ArticleNature genetics2014

Germline and somatic SMARCA4 mutations characterize small cell carcinoma of the ovary, hypercalcemic type.

Leora Witkowski, Jian Carrot-Zhang, Steffen Albrecht, Somayyeh Fahiminiya, Nancy Hamel, Eva Tomiak, David Grynspan, Emmanouil Saloustros, Javad Nadaf, Barbara Rivera and 32 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 230 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
230citing papers in PubMed, 4 pooled it
19.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

230 citing papers in PubMed, 4 syntheses or guidelines pooled it, 493 citations in OpenAlex.

  1. Pooled it
  2. A Systematic Literature Review of Whole Exome and Genome Sequencing Population Studies of Genetic Susceptibility to Cancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2020
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170 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

42 authors at 20 institutions in 9 countries.

Leora Witkowski1] Program in Cancer Genetics, Department of Oncology and Human Genetics, McGill University, Montreal, Quebec, Canada. [2] Department of Human Genetics, McGill University, Montreal, Quebec, Canada. [3].
Jian Carrot-Zhang1] Department of Human Genetics, McGill University, Montreal, Quebec, Canada. [2] McGill University and Génome Québec Innovation Centre, Montreal, Quebec, Canada. [3].
Steffen AlbrechtDepartment of Pathology, Montreal Children's Hospital, McGill University Health Centre, McGill University, Montreal, Quebec, Canada.
Somayyeh Fahiminiya1] Department of Human Genetics, McGill University, Montreal, Quebec, Canada. [2] McGill University and Génome Québec Innovation Centre, Montreal, Quebec, Canada.
Nancy Hamel1] Program in Cancer Genetics, Department of Oncology and Human Genetics, McGill University, Montreal, Quebec, Canada. [2] Department of Medical Genetics, Research Institute, McGill University Health Centre, Montreal, Quebec, Canada.
Eva TomiakDepartment of Genetics, Children's Hospital of Eastern Ontario, University of Ottawa, Ottawa, Ontario, Canada.
David GrynspanDepartment of Pathology and Laboratory Medicine, Children's Hospital of Eastern Ontario, University of Ottawa, Ottawa, Ontario, Canada.
Emmanouil SaloustrosHereditary Cancer Clinic, Department of Medical Oncology, University Hospital of Heraklion, Heraklion, Greece.
Javad Nadaf1] Department of Human Genetics, McGill University, Montreal, Quebec, Canada. [2] McGill University and Génome Québec Innovation Centre, Montreal, Quebec, Canada.
Barbara Rivera1] Program in Cancer Genetics, Department of Oncology and Human Genetics, McGill University, Montreal, Quebec, Canada. [2] Department of Human Genetics, McGill University, Montreal, Quebec, Canada.
Catherine GilpinDepartment of Genetics, Children's Hospital of Eastern Ontario, University of Ottawa, Ottawa, Ontario, Canada.
Ester Castellsagué1] Program in Cancer Genetics, Department of Oncology and Human Genetics, McGill University, Montreal, Quebec, Canada. [2] Department of Human Genetics, McGill University, Montreal, Quebec, Canada.
Rachel Silva-Smith1] Program in Cancer Genetics, Department of Oncology and Human Genetics, McGill University, Montreal, Quebec, Canada. [2] Department of Medical Genetics, Lady Davis Institute and Segal Cancer Centre, Jewish General Hospital, McGill University, Montreal, Quebec, Canada.
François Plourde1] Program in Cancer Genetics, Department of Oncology and Human Genetics, McGill University, Montreal, Quebec, Canada. [2] Department of Medical Genetics, Lady Davis Institute and Segal Cancer Centre, Jewish General Hospital, McGill University, Montreal, Quebec, Canada.
Mona Wu1] Program in Cancer Genetics, Department of Oncology and Human Genetics, McGill University, Montreal, Quebec, Canada. [2] Department of Human Genetics, McGill University, Montreal, Quebec, Canada.
Avi SaskinDepartment of Human Genetics, McGill University, Montreal, Quebec, Canada.
Madeleine Arseneault1] Department of Human Genetics, McGill University, Montreal, Quebec, Canada. [2] McGill University and Génome Québec Innovation Centre, Montreal, Quebec, Canada.
Rouzan G Karabakhtsian1] Department of Pathology and Laboratory Medicine, Markey Cancer Center, University of Kentucky, Lexington, Kentucky, USA. [2].
Elizabeth A ReillyDepartment of Pathology and Laboratory Medicine, Markey Cancer Center, University of Kentucky, Lexington, Kentucky, USA.
Frederick R UelandDepartment of Pathology and Laboratory Medicine, Markey Cancer Center, University of Kentucky, Lexington, Kentucky, USA.
Anna MargiolakiHereditary Cancer Clinic, Department of Medical Oncology, University Hospital of Heraklion, Heraklion, Greece.
Kitty PavlakisPathology Department, National and Kapodistrian University of Athens, Athens, Greece.
Sharon M CastellinoDepartment of Pediatrics, Hematology/Oncology, Wake Forest School of Medicine, Winston-Salem, North Carolina, USA.
Janez LamovecDepartment of Pathology, Institute of Oncology, Ljubljana, Slovenia.
Helen J MackayDepartment of Medical Oncology, Princess Margaret Cancer Centre, Toronto, Ontario, Canada.
Lawrence M RothDepartment of Pathology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Thomas M UlbrightDepartment of Pathology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Tracey A BenderDepartment of Pathology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Vassilis GeorgouliasHereditary Cancer Clinic, Department of Medical Oncology, University Hospital of Heraklion, Heraklion, Greece.
Michel LongyInstitut Bergonié, Unité d'Oncogénétique, Bordeaux, France.
Andrew BerchuckDivision of Gynecologic Oncology, Duke University Medical Center, Durham, North Carolina, USA.
Marc TischkowitzDepartment of Medical Genetics, University of Cambridge, Cambridge, UK.
Inga NagelInstitute of Human Genetics, Christian Albrechts University Kiel and University Hospital Schleswig-Holstein, Campus Kiel, Kiel, Germany.
Reiner SiebertInstitute of Human Genetics, Christian Albrechts University Kiel and University Hospital Schleswig-Holstein, Campus Kiel, Kiel, Germany.
Colin J R StewartSchool for Women's and Infants' Health, University of Western Australia, Perth, Western Australia, Australia.
Jocelyne ArseneauDepartment of Pathology, Royal Victoria Hospital, McGill University Health Centre, McGill University, Montreal, Quebec, Canada.
W Glenn McCluggageDepartment of Pathology, Royal Group of Hospitals Trust, Belfast, UK.
Blaise A ClarkeDepartment of Pathology Laboratory Medicine Program, University Health Network, Toronto, Ontario, Canada.
Yasser Riazalhosseini1] Department of Human Genetics, McGill University, Montreal, Quebec, Canada. [2] McGill University and Génome Québec Innovation Centre, Montreal, Quebec, Canada.
Martin HasselblattInstitute of Neuropathology, University Hospital-Münster, Münster, Germany.
Jacek Majewski1] Department of Human Genetics, McGill University, Montreal, Quebec, Canada. [2] McGill University and Génome Québec Innovation Centre, Montreal, Quebec, Canada.
William D Foulkes1] Program in Cancer Genetics, Department of Oncology and Human Genetics, McGill University, Montreal, Quebec, Canada. [2] Department of Medical Genetics, Lady Davis Institute and Segal Cancer Centre, Jewish General Hospital, McGill University, Montreal, Quebec, Canada. [3] Department of Human Genetics, McGill University, Montreal, Quebec, Canada. [4] Department of Medical Genetics, Research Institute, McGill University Health Centre, Montreal, Quebec, Canada.ORCID 0000000174274651
McGill University and Génome Québec Innovation Centre · CACentre For Human Genetics · INIndiana University School of MedicineUniversity Hospital of Heraklion · GRUniversity of Kentucky · USUniversity of Ottawa · CAChristian-Albrechts-Universität zu Kiel · DEJewish General Hospital · CAMcGill University Health Centre · CADuke Medical Center · USInstitut Bergonié · FRInstitute of Oncology Ljubljana · SIMcGill Genome Centre · CAMcGill University · CAMontreal Children's Hospital · CANational and Kapodistrian University of Athens · GRPrincess Margaret Cancer Centre · CARoyal Victoria Regional Health Centre · CAThe University of Western Australia · AUUniversity Health Network · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Small cell carcinoma of the ovary, hypercalcemic type (SCCOHT) is the most common undifferentiated ovarian malignancy in women under 40 years of age. We sequenced the exomes of six individuals from three families with SCCOHT. After discovering segregating deleterious germline mutations in SMARCA4 in all three families, we tested DNA from a fourth affected family, which also carried a segregating SMARCA4 germline mutation. All the familial tumors sequenced harbored either a somatic mutation or loss of the wild-type allele. Immunohistochemical analysis of these cases and additional familial and non-familial cases showed loss of SMARCA4 (BRG1) protein in 38 of 40 tumors overall. Sequencing of cases with available DNA identified at least one germline or somatic deleterious SMARCA4 mutation in 30 of 32 cases. Additionally, the SCCOHT cell line BIN-67 had biallelic deleterious mutations in SMARCA4. Our findings identify alterations in SMARCA4 as the major cause of SCCOHT, which could lead to improvements in genetic counseling and new treatment approaches.

Indexed as

Base SequenceCarcinoma, Small CellCell Line, TumorDNA HelicasesExomeFemaleGene ComponentsHumansImmunoblottingImmunohistochemistryIn Situ Hybridization, FluorescenceMolecular Sequence DataMutationNuclear ProteinsOvarian NeoplasmsSequence Analysis, DNADNA HelicasesNuclear ProteinsSMARCA4 protein, humanTranscription Factors

Identifiers

PMID24658002
OpenAlexW2059154675

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.