Evidence map›Paper›PMID 24657723›Full record

ArticleComparative biochemistry and physiology. Part D, Genomics & proteomics2014

The influences of parental diet and vitamin E intake on the embryonic zebrafish transcriptome.

Galen W Miller, Lisa Truong, Carrie L Barton, Edwin M Labut, Katie M Lebold, Maret G Traber, Robert L Tanguay

Abstract read
In one paragraph

Article in Comparative biochemistry and physiology. Part D, Genomics & proteomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Galen W MillerLinus Pauling Institute, Oregon State University, Corvallis, OR 97331, USA; Molecular and Cellular Biology Program, Oregon State University, Corvallis, OR 97331, USA.
Lisa TruongDepartment of Environmental and Molecular Toxicology, Oregon State University, Corvallis, OR 97331, USA.
Carrie L BartonEnvironmental Health Sciences Center, Oregon State University, Corvallis, OR 97331, USA.
Edwin M LabutLinus Pauling Institute, Oregon State University, Corvallis, OR 97331, USA.
Katie M LeboldLinus Pauling Institute, Oregon State University, Corvallis, OR 97331, USA; School of Biological and Population Health Sciences, Oregon State University, Corvallis, OR 97331, USA.
Maret G TraberLinus Pauling Institute, Oregon State University, Corvallis, OR 97331, USA; Environmental Health Sciences Center, Oregon State University, Corvallis, OR 97331, USA; School of Biological and Population Health Sciences, Oregon State University, Corvallis, OR 97331, USA.
Robert L TanguayDepartment of Environmental and Molecular Toxicology, Oregon State University, Corvallis, OR 97331, USA; Environmental Health Sciences Center, Oregon State University, Corvallis, OR 97331, USA. Electronic address: robert.tanguay@oregonstate.edu.
Oregon State University · US

Funding

Reducing Susceptibility to Environmental Stress Throughout the Life SpanP30ES000210 · NIEHS · OREGON STATE UNIVERSITY · PI BECKMAN, JOSEPH S · 1985 to 2015
$21.4M
In vivo systems level analysis of gene-environment interactionsRC4ES019764 · NIEHS · OREGON STATE UNIVERSITY · PI TANGUAY, ROBYN L · 2010 to 2010
$1.9M
Mechanisms of Vitamin E Function Studied in ZebrafishR01HD062109 · NICHD · OREGON STATE UNIVERSITY · PI TRABER, MARET G · 2009 to 2010
$737k
NICHD NIH HHS R01 HD062109NIEHS NIH HHS P30 ES000210NIEHS NIH HHS RC4 ES019764
6 · The paper itself

Abstract

The composition of the typical commercial diet fed to zebrafish can dramatically vary. By utilizing defined diets we sought to answer two questions: 1) How does the embryonic zebrafish transcriptome change when the parental adults are fed a commercial lab diet compared with a sufficient, defined diet (E+)? 2) Does a vitamin E-deficient parental diet (E-) further change the embryonic transcriptome? We conducted a global gene expression study using embryos from zebrafish fed a commercial (Lab), an E+ or an E- diet. To capture differentially expressed transcripts prior to onset of overt malformations observed in E- embryos at 48h post-fertilization (hpf), embryos were collected from each group at 36hpf. Lab embryos differentially expressed (p<0.01) 946 transcripts compared with the E+ embryos, and 2656 transcripts compared with the E- embryos. The differences in protein, fat and micronutrient intakes in zebrafish fed the Lab compared with the E+ diet demonstrate that despite overt morphologic consistency, significant differences in gene expression occurred. Moreover, functional analysis of the significant transcripts in the E- embryos suggested perturbed energy metabolism, leading to overt malformations and mortality. Thus, these findings demonstrate that parental zebrafish diet has a direct impact on the embryonic transcriptome.

Indexed as

DietAnimalsEmbryo, NonmammalianFemaleGene Expression Regulation, DevelopmentalMaleTranscriptomeVitamin EZebrafishVitamin EDefined dietMicroarrayTranscriptomeVitamin EZebrafish

Identifiers

PMID24657723
PMCPMC4037372
OpenAlexW2001260161

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.