Evidence map›Paper›PMID 24657443›Full record

ArticleBiochemical and biophysical research communications2014

Identification of prosaposin and transgelin as potential biomarkers for gallbladder cancer using quantitative proteomics.

Nandini A Sahasrabuddhe, Mustafa A Barbhuiya, Shushruta Bhunia, Tejaswini Subbannayya, Harsha Gowda, Jayshree Advani, Braj R Shrivastav, Sanjay Navani, Pamela Leal, Juan Carlos Roa and 5 more

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 39 citations in OpenAlex.

  1. Cathepsin Z/X: Breaking Down the Known and Unknown.International journal of molecular sciences · 2026
    Review
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  13. Gallbladder cancer integrated bioinformatics analysis of protein profile data.Gastroenterology and hepatology from bed to bench · 2019
    Article
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  19. Global methylation profiling to identify epigenetic signature of gallbladder cancer and gallstone disease.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 3 countries.

Nandini A SahasrabuddheInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Mustafa A BarbhuiyaCentre for Genomics, Molecular and Human Genetics, Jiwaji University, Gwalior 474011, India; School of Studies in Zoology, Jiwaji University, Gwalior, India.
Shushruta BhuniaCentre for Genomics, Molecular and Human Genetics, Jiwaji University, Gwalior 474011, India.
Tejaswini SubbannayyaInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India; Amrita School of Biotechnology, Amrita University, Kollam, India.
Harsha GowdaInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Jayshree AdvaniInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Braj R ShrivastavCancer Hospital and Research Institute, Gwalior, India.
Sanjay NavaniLAB SURGPATH, Mumbai, India.
Pamela LealMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA; Department of Pathology, Universidad de La Frontera, CEGIN-BIOREN, Temuco, Chile.
Juan Carlos RoaDepartment of Pathology, Pontificia Universidad Catolica de Chile, Santiago, Chile.
Raghothama ChaerkadyMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Sanjeev GuptaCancer Hospital and Research Institute, Gwalior, India.
Aditi ChatterjeeInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Akhilesh PandeyInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India; McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA; Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA; Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA; Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Pramod K TiwariCentre for Genomics, Molecular and Human Genetics, Jiwaji University, Gwalior 474011, India; School of Studies in Zoology, Jiwaji University, Gwalior, India. Electronic address: pk_tiwari@hotmail.com.
Institute of Bioinformatics · INJiwaji University · INCancer Hospital and Research Institute · INJohns Hopkins University · USAmrita Vishwa Vidyapeetham · INJohns Hopkins Medicine · USPontificia Universidad Católica de Chile · CL

Funding

Translational Research Central ServicesP30CA006973 · NCI · JOHNS HOPKINS UNIVERSITY · PI WILLIAM George NELSON · 1985 to 2026
$208.6M
NCI NIH HHS P30 CA006973Wellcome Trust
6 · The paper itself

Abstract

Gallbladder cancer is an uncommon but lethal malignancy with particularly high incidence in Chile, India, Japan and China. There is a paucity of unbiased large-scale studies investigating molecular basis of gallbladder cancer. To systematically identify differentially regulated proteins in gallbladder cancer, iTRAQ-based quantitative proteomics of gallbladder cancer was carried out using Fourier transform high resolution mass spectrometry. Of the 2575 proteins identified, proteins upregulated in gallbladder cancer included several lysosomal proteins such as prosaposin, cathepsin Z and cathepsin H. Downregulated proteins included serine protease HTRA1 and transgelin, which have been reported to be downregulated in several other cancers. Novel biomarker candidates including prosaposin and transgelin were validated to be upregulated and downregulated, respectively, in gallbladder cancer using tissue microarrays. Our study provides the first large scale proteomic characterization of gallbladder cancer which will serve as a resource for future discovery of biomarkers for gallbladder cancer.

Indexed as

Biomarkers, TumorChromatography, LiquidGallbladderGallbladder NeoplasmsGene Expression Regulation, NeoplasticHumansImmunohistochemistryMicrofilament ProteinsMuscle ProteinsProteomeProteomicsSaposinsTandem Mass SpectrometryTissue Array AnalysisBiomarkers, TumorMicrofilament ProteinsMuscle ProteinsProteomePSAP protein, humanSaposinstransgelinBiomarkersGallbladder canceriTRAQProsaposinQuantitative proteomicsTransgelin

Identifiers

PMID24657443
PMCPMC4696041
OpenAlexW2070466026

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.