Evidence map›Paper›PMID 24657250›Full record

ArticleMutation research

A ΔdinB mutation that sensitizes Escherichia coli to the lethal effects of UV- and X-radiation.

Mei-Chong W Lee, Magdalena Franco, Doris M Vargas, Deborah A Hudman, Steven J White, Robert G Fowler, Neil J Sargentini

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In one paragraph

Article in Mutation research. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Mei-Chong W LeeDepartment of Biological Sciences, San Jose State University, San Jose, CA 95192, USA.
Magdalena FrancoDepartment of Biological Sciences, San Jose State University, San Jose, CA 95192, USA.
Doris M VargasDepartment of Biological Sciences, San Jose State University, San Jose, CA 95192, USA.
Deborah A HudmanDepartment of Microbiology and Immunology, A.T. Still University, Kirksville College of Osteopathic Medicine, Kirksville, MO 63501, USA.
Steven J WhiteDepartment of Biological Sciences, San Jose State University, San Jose, CA 95192, USA.
Robert G FowlerDepartment of Biological Sciences, San Jose State University, San Jose, CA 95192, USA. Electronic address: rfowler@sjsu.edu.
Neil J SargentiniDepartment of Microbiology and Immunology, A.T. Still University, Kirksville College of Osteopathic Medicine, Kirksville, MO 63501, USA.
San Jose State University · USA.T. Still University · US

Funding

NIGMS MARC UNDERGRADUATE RESEARCH TRAINING GRANTT34GM008253 · NIGMS · SAN JOSE STATE UNIVERSITY · PI OUVERNEY, CLEBER COSTA · 1988 to 2020
$8.4M
NIGMS NIH HHS 5T34GM008253NIGMS NIH HHS T34 GM008253
6 · The paper itself

Abstract

The DinB (PolIV) protein of Escherichia coli participates in several cellular functions. We investigated a dinB mutation, Δ(dinB-yafN)883(::kan) [referred to as ΔdinB883], which strongly sensitized E. coli cells to both UV- and X-radiation killing. Earlier reports indicated dinB mutations had no obvious effect on UV radiation sensitivity which we confirmed by showing that normal UV radiation sensitivity is conferred by the ΔdinB749 allele. Compared to a wild-type strain, the ΔdinB883 mutant was most sensitive (160-fold) in early to mid-logarithmic growth phase and much less sensitive (twofold) in late log or stationary phases, thus showing a growth phase-dependence for UV radiation sensitivity. This sensitizing effect of ΔdinB883 is assumed to be completely dependent upon the presence of UmuDC protein; since the ΔdinB883 mutation did not sensitize the ΔumuDC strain to UV radiation killing throughout log phase and early stationary phase growth. The DNA damage checkpoint activity of UmuDC was clearly affected by ΔdinB883 as shown by testing a umuC104 ΔdinB883 double-mutant. The sensitivities of the ΔumuDC strain and the ΔdinB883 ΔumuDC double-mutant strain were significantly greater than for the ΔdinB883 strain, suggesting that the ΔdinB883 allele only partially suppresses UmuDC activity. The ΔdinB883 mutation partially sensitized (fivefold) uvrA and uvrB strains to UV radiation, but did not sensitize a ΔrecA strain. A comparison of the DNA sequences of the ΔdinB883 allele with the sequences of the Δ(dinB-yafN)882(::kan) and ΔdinB749 alleles, which do not sensitize cells to UV radiation, revealed ΔdinB883 is likely a "gain-of-function" mutation. The ΔdinB883 allele encodes the first 54 amino acids of wild-type DinB followed by 29 predicted residues resulting from the continuation of the dinB reading frame into an adjacent insertion fragment. The resulting polypeptide is proposed to interfere directly or indirectly with UmuDC function(s) involved in protecting cells against the lethal effects of radiation.

Indexed as

Microbial ViabilityMutationUltraviolet RaysAdenosine TriphosphatasesAllelesDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA HelicasesEscherichia coliEscherichia coli ProteinsX-RaysAdenosine TriphosphatasesDinB protein, E coliDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA HelicasesEscherichia coli ProteinsUmuC protein, E coliUmuD protein, E coliUvrA protein, E coliUvrB protein, E coliCheckpointDinBEscherichia coliTLSUmuDCUV radiation sensitivity

Identifiers

PMID24657250
PMCPMC4172556
OpenAlexW2003345374

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.