Evidence map›Paper›PMID 24655519›Full record

ArticleBiophysical journal2014

Open and closed conformations of the isolated transmembrane domain of death receptor 5 support a new model of activation.

Andrew K Lewis, Zachary M James, Jesse E McCaffrey, Anthony R Braun, Christine B Karim, David D Thomas, Jonathan N Sachs

Abstract readLetter
In one paragraph

Article in Biophysical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Conformational states of TNFR1 as a molecular switch for receptor function.Protein science : a publication of the Protein Society · 2020
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Andrew K LewisDepartment of Biomedical Engineering, University of Minnesota, Minneapolis, Minnesota.
Zachary M JamesDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, Minnesota.
Jesse E McCaffreyDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, Minnesota.
Anthony R BraunDepartment of Biomedical Engineering, University of Minnesota, Minneapolis, Minnesota.
Christine B KarimDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, Minnesota.
David D ThomasDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, Minnesota.
Jonathan N SachsDepartment of Biomedical Engineering, University of Minnesota, Minneapolis, Minnesota. Electronic address: jnsachs@umn.edu.

Funding

TRAINING PROGRAM IN MUSCLE RESEARCHT32AR007612 · NIAMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI JAMES M ERVASTI, DAWN A LOWE · 2001 to 2026
$11.3M
Structural Dynamics of Muscle Calcium ATPase RegulationR01GM027906 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI THOMAS, DAVID D · 1985 to 2016
$8.6M
Dynamics of transmembrane dimers in TNF-Receptors by EPR and molecular simulationR01GM107175 · NIGMS · UNIVERSITY OF MINNESOTA · PI SACHS, JONATHAN N · 2014 to 2017
$1.3M
NIAMS NIH HHS T32 AR007612NIGMS NIH HHS GM27906NIGMS NIH HHS R01 GM027906NIGMS NIH HHS R01 GM107175
6 · The paper itself

Abstract

It has long been presumed that activation of the apoptosis-initiating Death Receptor 5, as well as other structurally homologous members of the TNF-receptor superfamily, relies on ligand-stabilized trimerization of noninteracting receptor monomers. We and others have proposed an alternate model in which the TNF-receptor dimer-sitting at the vertices of a large supramolecular receptor network of ligand-bound receptor trimers-undergoes a closed-to-open transition, propagated through a scissorslike conformational change in a tightly bundled transmembrane (TM) domain dimer. Here we have combined electron paramagnetic resonance spectroscopy and potential-of-mean force calculations on the isolated TM domain of the long isoform of DR5. The experiments and calculations both independently validate that the opening transition is intrinsic to the physical character of the TM domain dimer, with a significant energy barrier separating the open and closed states.

Indexed as

Molecular Dynamics SimulationAmino Acid SequenceAnimalsHumansMolecular Sequence DataReceptors, TNF-Related Apoptosis-Inducing LigandReceptors, TNF-Related Apoptosis-Inducing Ligand

Identifiers

PMID24655519
PMCPMC3984993

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.