Evidence map›Paper›PMID 24655510›Full record

ArticleBiophysical journal2014

Exploring the structure of the 100 amino-acid residue long N-terminus of the plant antenna protein CP29.

Maryam Hashemi Shabestari, Cor J A M Wolfs, Ruud B Spruijt, Herbert van Amerongen, Martina Huber

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Article in Biophysical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. The origin of pigment-binding differences in CP29 and LHCII: the role of protein structure and dynamics.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Maryam Hashemi ShabestariDepartment of Molecular Physics, Leiden University, Leiden, The Netherlands.
Cor J A M WolfsLaboratory of Biophysics, Wageningen University, Wageningen, The Netherlands.
Ruud B SpruijtLaboratory of Biophysics, Wageningen University, Wageningen, The Netherlands.
Herbert van AmerongenLaboratory of Biophysics, Wageningen University, Wageningen, The Netherlands. Electronic address: huber@physics.leidenuniv.nl.
Martina HuberDepartment of Molecular Physics, Leiden University, Leiden, The Netherlands. Electronic address: huber@physics.leidenuniv.nl.
Wageningen University & Research · NLLeiden University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The structure of the unusually long (∼100 amino-acid residues) N-terminal domain of the light-harvesting protein CP29 of plants is not defined in the crystal structure of this membrane protein. We studied the N-terminus using two electron paramagnetic resonance (EPR) approaches: the rotational diffusion of spin labels at 55 residues with continuous-wave EPR, and three sets of distances with a pulsed EPR method. The N-terminus is relatively structured. Five regions that differ considerably in their dynamics are identified. Two regions have low rotational diffusion, one of which shows α-helical character suggesting contact with the protein surface. This immobile part is flanked by two highly dynamic, unstructured regions (loops) that cover residues 10-22 and 82-91. These loops may be important for the interaction with other light-harvesting proteins. The region around residue 4 also has low rotational diffusion, presumably because it attaches noncovalently to the protein. This section is close to a phosphorylation site (Thr-6) in related proteins, such as those encoded by the Lhcb4.2 gene. Phosphorylation might influence the interaction with other antenna complexes, thereby regulating the supramolecular organization in the thylakoid membrane.

Indexed as

Molecular Dynamics SimulationAmino Acid SequenceArabidopsisArabidopsis ProteinsChloroplast ProteinsMolecular Sequence DataMutationProtein Structure, TertiaryRibonucleoproteinsArabidopsis ProteinsChloroplast ProteinsRBP29 protein, ArabidopsisRibonucleoproteins

Identifiers

PMID24655510
PMCPMC3985499
OpenAlexW2149937251

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.