Evidence map›Paper›PMID 24651318›Full record

ArticlePloS one2014

Influence of calcium in extracellular DNA mediated bacterial aggregation and biofilm formation.

Theerthankar Das, Shama Sehar, Leena Koop, Yie Kuan Wong, Safia Ahmed, Khawar Sohail Siddiqui, Mike Manefield

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 190 citations in OpenAlex.

  1. How Bioactive Glass S53P4 Kills Bacteria.Journal of functional biomaterials · 2026
    Article
  2. Synergistic phototherapy and CaBioactive materials · 2026
    Article
  3. UnderstandingMicroorganisms · 2026
    Review
  4. Review
  5. Article
  6. The Effects ofMicroorganisms · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Antibiotics (Basel, Switzerland) · 2024
    Review
  12. Corrected and republished from: "Applied and environmental microbiology · 2024
    Article
  13. Article
  14. Biofilm · 2024
    Article
  15. Article
  16. Review
  17. Article
  18. Gene expression during the development of Mycobacterium smegmatis biofilms on hydroxyapatite surfaces.International microbiology : the official journal of the Spanish Society for Microbiology · 2024
    Article
  19. Review
  20. Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Theerthankar DasCentre for Marine BioInnovation, School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, Australia.
Shama SeharCentre for Marine BioInnovation, School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, Australia; Department of Microbiology, Quaid-i-Azam University, Islamabad, Pakistan.
Leena KoopCentre for Marine BioInnovation, School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, Australia.
Yie Kuan WongCentre for Marine BioInnovation, School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, Australia.
Safia AhmedDepartment of Microbiology, Quaid-i-Azam University, Islamabad, Pakistan.
Khawar Sohail SiddiquiSchool of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, Australia.
Mike ManefieldCentre for Marine BioInnovation, School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, Australia.
UNSW Sydney · AUQuaid-i-Azam University · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Calcium (Ca(2+)) has an important structural role in guaranteeing the integrity of the outer lipopolysaccharide layer and cell walls of bacterial cells. Extracellular DNA (eDNA) being part of the slimy matrix produced by bacteria promotes biofilm formation through enhanced structural integrity of the matrix. Here, the concurrent role of Ca(2+) and eDNA in mediating bacterial aggregation and biofilm formation was studied for the first time using a variety of bacterial strains and the thermodynamics of DNA to Ca(2+) binding. It was found that the eDNA concentrations under both planktonic and biofilm growth conditions were different among bacterial strains. Whilst Ca(2+) had no influence on eDNA release, presence of eDNA by itself favours bacterial aggregation via attractive acid-base interactions in addition, its binding with Ca(2+) at biologically relevant concentrations was shown further increase in bacterial aggregation via cationic bridging. Negative Gibbs free energy (ΔG) values in iTC data confirmed that the interaction between DNA and Ca(2+) is thermodynamically favourable and that the binding process is spontaneous and exothermic owing to its highly negative enthalpy. Removal of eDNA through DNase I treatment revealed that Ca(2+) alone did not enhance cell aggregation and biofilm formation. This discovery signifies the importance of eDNA and concludes that existence of eDNA on bacterial cell surfaces is a key facilitator in binding of Ca(2+) to eDNA thereby mediating bacterial aggregation and biofilm formation.

Indexed as

BacteriaBiofilmsCalciumDeoxyribonuclease IDNAExtracellular SpacePlanktonPseudomonas aeruginosaThermodynamicsCalciumDeoxyribonuclease IDNA

Identifiers

PMID24651318
PMCPMC3961253
OpenAlexW2056925431

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.