ArticlePloS one2014
Transcriptome analysis of salt tolerant common bean (Phaseolus vulgaris L.) under saline conditions.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.
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Who cites it
49 citing papers in PubMed.
- Nutritional and Biochemical Diversity in Beans Accessions from ThreeACS nutrition science · 2026Article
- Silk-trehalose seed coating technology preservesFrontiers in plant science · 2026Article
- An integrated phenotypic and molecular approach to identify salinity-tolerant lentil (Frontiers in genetics · 2026Article
- A panomics-driven framework for the improvement of major food legume crops: advances, challenges, and future prospects.Horticulture research · 2025Article
- Predicting the role of β-GAL genes in bean under abiotic stress and genome-wide characterization of β-GAL gene family members.Protoplasma · 2025Article
- Exogenous acetylsalicylic acid mitigates cold stress in common bean seedlings by enhancing antioxidant defense and photosynthetic efficiency.Frontiers in plant science · 2025Article
- Article
- Omics-Driven Strategies for Developing Saline-Smart Lentils: A Comprehensive Review.International journal of molecular sciences · 2024Review
- Understanding of Plant Salt Tolerance Mechanisms and Application to Molecular Breeding.International journal of molecular sciences · 2024Review
- Unraveling the drought-responsive transcriptomes in nodules of two common bean genotypes during biological nitrogen fixation.Frontiers in plant science · 2024Article
- Characterization ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2023Article
- Integrated transcriptomics and metabolomics analysis reveals key regulatory network that response to cold stress in common Bean (Phaseolus vulgaris L.).BMC plant biology · 2023Article
- Characterization and Application of EST-SSR Markers Developed from Transcriptome Sequences inGenes · 2023Article
- Transcriptome analysis of halophyte Nitraria tangutorum reveals multiple mechanisms to enhance salt resistance.Scientific reports · 2022Article
- Identification and Characterization of SRS Genes in Phaseolus vulgaris Genome and Their Responses Under Salt Stress.Biochemical genetics · 2022Article
- Physiological Analysis and Transcriptome Sequencing Reveal the Effects of Salt Stress on Banana (Frontiers in plant science · 2022Article
- Recent advancement in OMICS approaches to enhance abiotic stress tolerance in legumes.Frontiers in plant science · 2022Review
- Review
- Overexpression of A Biotic Stress-InducibleInternational journal of molecular sciences · 2021Article
- Transcriptome analysis and functional identification of GmMYB46 in soybean seedlings under salt stress.PeerJ · 2021Article
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Salinity is one of the important abiotic stress factors that limit crop production. Common bean, Phaseolus vulgaris L., a major protein source in developing countries, is highly affected by soil salinity and the information on genes that play a role in salt tolerance is scarce. We aimed to identify differentially expressed genes (DEGs) and related pathways by comprehensive analysis of transcriptomes of both root and leaf tissues of the tolerant genotype grown under saline and control conditions in hydroponic system. We have generated a total of 158 million high-quality reads which were assembled into 83,774 all-unigenes with a mean length of 813 bp and N50 of 1,449 bp. Among the all-unigenes, 58,171 were assigned with Nr annotations after homology analyses. It was revealed that 6,422 and 4,555 all-unigenes were differentially expressed upon salt stress in leaf and root tissues respectively. Validation of the RNA-seq quantifications (RPKM values) was performed by qRT-PCR (Quantitative Reverse Transcription PCR) analyses. Enrichment analyses of DEGs based on GO and KEGG databases have shown that both leaf and root tissues regulate energy metabolism, transmembrane transport activity, and secondary metabolites to cope with salinity. A total of 2,678 putative common bean transcription factors were identified and classified under 59 transcription factor families; among them 441 were salt responsive. The data generated in this study will help in understanding the fundamentals of salt tolerance in common bean and will provide resources for functional genomic studies.
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