Evidence map›Paper›PMID 24650357›Full record

ArticleACS chemical biology2014

Identification and characterization of an allosteric inhibitory site on dihydropteroate synthase.

Dalia I Hammoudeh, Mihir Daté, Mi-Kyung Yun, Weixing Zhang, Vincent A Boyd, Ariele Viacava Follis, Elizabeth Griffith, Richard E Lee, Donald Bashford, Stephen W White

Open access · bronzeAbstract read
In one paragraph

Article in ACS chemical biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 38 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Dalia I HammoudehDepartments of †Structural Biology and ‡Chemical Biology and Therapeutics, St. Jude Children's Research Hospital , Memphis, Tennessee 38105, United States.
Mihir Daté
Mi-Kyung Yun
Weixing Zhang
Vincent A Boyd
Ariele Viacava Follis
Elizabeth Griffith
Richard E Lee
Donald Bashford
Stephen W White
University of Tennessee Health Science Center · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Novel Inhibitors to DHPS to Probe Catalytic Mechanism & Therapeutic Potential - rR01AI070721 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI LEE, RICHARD E., WHITE, STEPHEN W · 2006 to 2015
$4.6M
NCI NIH HHS CA21765NCI NIH HHS P30 CA021765NIAID NIH HHS AI070721NIAID NIH HHS R01 AI070721
6 · The paper itself

Abstract

The declining effectiveness of current antibiotics due to the emergence of resistant bacterial strains dictates a pressing need for novel classes of antimicrobial therapies, preferably against molecular sites other than those in which resistance mutations have developed. Dihydropteroate synthase (DHPS) catalyzes a crucial step in the bacterial pathway of folic acid synthesis, a pathway that is absent in higher vertebrates. As the target of the sulfonamide class of drugs that were highly effective until resistance mutations arose, DHPS is known to be a valuable bacterial Achilles heel that is being further exploited for antibiotic development. Here, we report the discovery of the first known allosteric inhibitor of DHPS. NMR and crystallographic studies reveal that it engages a previously unknown binding site at the dimer interface. Kinetic data show that this inhibitor does not prevent substrate binding but rather exerts its effect at a later step in the catalytic cycle. Molecular dynamics simulations and quasi-harmonic analyses suggest that the effect of inhibitor binding is transmitted from the dimer interface to the active-site loops that are known to assume an obligatory ordered substructure during catalysis. Together with the kinetics results, these structural and dynamics data suggest an inhibitory mechanism in which binding at the dimer interface impacts loop movements that are required for product release. Our results potentially provide a novel target site for the development of new antibiotics.

Indexed as

Allosteric RegulationAllosteric SiteBacillus anthracisBinding SitesCatalysisCatalytic DomainComputational BiologyCrystallography, X-RayDihydropteroate SynthaseEnzyme InhibitorsHumansKineticsMagnetic Resonance SpectroscopyModels, MolecularMolecular Dynamics SimulationProtein BindingDihydropteroate SynthaseEnzyme Inhibitors

Identifiers

PMID24650357
PMCPMC4076017
OpenAlexW2082972773

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.