Evidence map›Paper›PMID 24649856›Full record

ArticleThe FEBS journal2014

Understanding molecular recognition of promiscuity of thermophilic methionine adenosyltransferase sMAT from Sulfolobus solfataricus.

Fengbin Wang, Shanteri Singh, Jianjun Zhang, Tyler D Huber, Kate E Helmich, Manjula Sunkara, Katherine A Hurley, Randal D Goff, Craig A Bingman, Andrew J Morris and 2 more

Open access · greenAbstract read
In one paragraph

Article in The FEBS journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Methyltransferases: Functions and Applications.Chembiochem : a European journal of chemical biology · 2022
    Review
  3. Article
  4. From Natural Methylation to Versatile Alkylations Using Halide Methyltransferases.Chembiochem : a European journal of chemical biology · 2021
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Structure of a critical metabolic enzyme: S-adenosylmethionine synthetase from Cryptosporidium parvum.Acta crystallographica. Section F, Structural biology communications · 2019
    Article
  13. Proteins analysed as virtual knots.Scientific reports · 2017
    Article
  14. Review
  15. Article
  16. Crystallography captures catalytic steps in human methionine adenosyltransferase enzymes.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Fengbin WangDepartment of Biochemistry and Cell Biology, Rice University, Houston, TX, USA.
Shanteri Singh
Jianjun Zhang
Tyler D Huber
Kate E Helmich
Manjula Sunkara
Katherine A Hurley
Randal D Goff
Craig A Bingman
Andrew J Morris
Jon S Thorson
George N Phillips
University of Kentucky · USUniversity of Wisconsin–Madison · USRice University · USWestern Wyoming Community College · US

Funding

The role of IKKß in linking obesity to adipose tissue inflammation and adipogeneP20GM103527 · NIGMS · UNIVERSITY OF KENTUCKY · PI CASSIS, LISA A · 2012 to 2017
$13.7M
Kentucky Center for Clinical and Translational ScienceUL1TR000117 · NCATS · UNIVERSITY OF KENTUCKY · PI KERN, PHILIP A · 2012 to 2015
$13.3M
In Vitro Glycorandomization of Natural ProductsR37AI052218 · NIAID · UNIVERSITY OF KENTUCKY · PI THORSON, JON SCOTT · 2012 to 2021
$4.0M
STUDIES ON CALICHEAMICIN BIOSYNTHESIS AND SELF RESISTANCER01CA084374 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI THORSON, JON SCOTT · 2000 to 2013
$3.6M
Enzyme Discovery for Natural Product BiosynthesisU01GM098248 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI PHILLIPS, GEORGE NEAL · 2011 to 2015
$2.8M
Thermo/Finnigan TSQ AM Triple Stage Quadrupole Mass SpectrometerS10RR024598 · NCRR · UNIVERSITY OF KENTUCKY · PI MORRIS, ANDREW J · 2008 to 2008
$493k
Advion Triversa Nanomate/ABSciex Nanospray III Ion Source for Targeted LipidomicsS10RR026884 · NCRR · UNIVERSITY OF KENTUCKY · PI MORRIS, ANDREW J · 2011 to 2011
$106k
NCATS NIH HHS UL1 TR000117NCATS NIH HHS UL1TR000117NCI NIH HHS R01 CA084374NCI NIH HHS R01 CA84374NCRR NIH HHS S10 RR024598NCRR NIH HHS S10 RR026884NIAID NIH HHS R37 AI052218NIGMS NIH HHS P20 GM103527NIGMS NIH HHS U01 GM098248
6 · The paper itself

Abstract

unlabelledMethionine adenosyltransferase (MAT) is a family of enzymes that utilizes ATP and methionine to produce S-adenosylmethionine (AdoMet), the most crucial methyl donor in the biological methylation of biomolecules and bioactive natural products. Here, we report that the MAT from Sulfolobus solfataricus (sMAT), an enzyme from a poorly explored class of the MAT family, has the ability to produce a range of differentially alkylated AdoMet analogs in the presence of non-native methionine analogs and ATP. To investigate the molecular basis for AdoMet analog production, we have crystallized the sMAT in the AdoMet bound, S-adenosylethionine (AdoEth) bound and unbound forms. Notably, among these structures, the AdoEth bound form offers the first MAT structure containing a non-native product, and cumulatively these structures add new structural insight into the MAT family and allow for detailed active site comparison with its homologs in Escherichia coli and human. As a thermostable MAT structure from archaea, the structures herein also provide a basis for future engineering to potentially broaden AdoMet analog production as reagents for methyltransferase-catalyzed 'alkylrandomization' and/or the study of methylation in the context of biological processes. DATABASES: PDB IDs: 4HPV, 4L7I, 4K0B and 4L2Z. EC 2.5.1.6 STRUCTURED DIGITAL ABSTRACT: • sMAT and sMAT bind by x-ray crystallography (View interaction).

Indexed as

Amino Acid MotifsArchaeal ProteinsCatalytic DomainCrystallography, X-RayKineticsMethionineMethionine AdenosyltransferaseModels, MolecularProtein BindingProtein Structure, QuaternarySubstrate SpecificitySulfolobus solfataricusArchaeal ProteinsMethionineMethionine Adenosyltransferaseenzyme engineeringmethionine adenosyltransferasenatural productS-adenosylmethionineX-ray diffraction

Identifiers

PMID24649856
PMCPMC4169312
OpenAlexW2078859984

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.