Evidence map›Paper›PMID 24648496›Full record

ArticleMolecular biology of the cell2014

Multiple inputs control sulfur-containing amino acid synthesis in Saccharomyces cerevisiae.

Meru J Sadhu, James J Moresco, Anjali D Zimmer, John R Yates, Jasper Rine

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 42 citations in OpenAlex.

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  13. Network dynamics of the yeast methyltransferome.Microbial cell (Graz, Austria) · 2019
    Article
  14. Article
  15. Review
  16. Genetics ofeLife · 2018
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Meru J SadhuDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720California Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA 94720.
James J MorescoDepartment of Chemical Physiology, Scripps Research Institute, La Jolla, CA 92037.
Anjali D ZimmerDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720.
John R YatesDepartment of Chemical Physiology, Scripps Research Institute, La Jolla, CA 92037.
Jasper RineDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720California Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA 94720 jrine@berkeley.edu.
QB3 · USScripps Research Institute · USUniversity of California, Berkeley · US

Funding

THE MOLECULAR BASIS OF CELL FUNCTIONT32GM007232 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BILDER, DAVID, UNAL, ELCIN · 1985 to 2022
$36.4M
ZDS2P REGULATES SWE1P-DEPENDENT POLARIZED CELL GROWTH IN S CEREVISIAEP41RR011823 · NCRR · UNIVERSITY OF WASHINGTON · PI FIELDS, STANLEY · 1996 to 2011
$24.7M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI YATES III, JOHN R · 2012 to 2021
$20.7M
GENETIC ANALYSIS OF THE GENES CONTROLLING A POSITIONR01GM031105 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RINE, JASPER D · 1985 to 2020
$6.4M
Impact of Genetic Variation on Folate Metabolsim: Etiology of Neural Tube DefectsR01GM072859 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RINE, JASPER D · 2007 to 2015
$4.4M
GENETIC ANALYSIS OF GENES CONTROLLING A POSITION EFFECTR37GM031105 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RINE, JASPER D · 1999 to 2008
$3.5M
Genetic Regulation of the Response to Dietary RestrictionR01AG027463 · NIA · UNIVERSITY OF CALIFORNIA BERKELEY · PI DILLIN, ANDREW G · 2008 to 2012
$2.4M
NCRR NIH HHS 5P41RR011823-17NCRR NIH HHS P41 RR011823NIA NIH HHS R01 AG027463NIA NIH HHS R01AG027463-04NIGMS NIH HHS 8 P41 GM103533-17NIGMS NIH HHS GM072859NIGMS NIH HHS GM31105NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R01 GM031105NIGMS NIH HHS R01 GM072859NIGMS NIH HHS R37 GM031105NIGMS NIH HHS T32 GM 007232NIGMS NIH HHS T32 GM007232
6 · The paper itself

Abstract

In Saccharomyces cerevisiae, transcription of the MET regulon, which encodes the proteins involved in the synthesis of the sulfur-containing amino acids methionine and cysteine, is repressed by the presence of either methionine or cysteine in the environment. This repression is accomplished by ubiquitination of the transcription factor Met4, which is carried out by the SCF(Met30) E3 ubiquitin ligase. Mutants defective in MET regulon repression reveal that loss of Cho2, which is required for the methylation of phosphatidylethanolamine to produce phosphatidylcholine, leads to induction of the MET regulon. This induction is due to reduced cysteine synthesis caused by the Cho2 defects, uncovering an important link between phospholipid synthesis and cysteine synthesis. Antimorphic mutants in S-adenosyl-methionine (SAM) synthetase genes also induce the MET regulon. This effect is due, at least in part, to SAM deficiency controlling the MET regulon independently of SAM's contribution to cysteine synthesis. Finally, the Met30 protein is found in two distinct forms whose relative abundance is controlled by the availability of sulfur-containing amino acids. This modification could be involved in the nutritional control of SCF(Met30) activity toward Met4.

Indexed as

Basic-Leucine Zipper Transcription FactorsCysteineF-Box ProteinsGene Expression Regulation, FungalGreen Fluorescent ProteinsMethionineMethionine AdenosyltransferaseMethylationPhosphatidylcholinesPhosphatidylethanolamine N-MethyltransferasePhosphatidylethanolaminesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsS-AdenosylmethionineUbiquitinationUbiquitin-Protein Ligase ComplexesBasic-Leucine Zipper Transcription FactorsCHO2 protein, S cerevisiaeCysteineF-Box ProteinsGreen Fluorescent ProteinsMET30 protein, S cerevisiaeMET4 protein, S cerevisiaeMethionineMethionine AdenosyltransferasePhosphatidylcholinesphosphatidylethanolaminePhosphatidylethanolamine N-MethyltransferasePhosphatidylethanolaminesSaccharomyces cerevisiae ProteinsS-AdenosylmethionineUbiquitin-Protein Ligase Complexes

Identifiers

PMID24648496
PMCPMC4019496
OpenAlexW2110600759

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.