Evidence map›Paper›PMID 24646179›Full record

ArticleACS chemical biology2014

Expanded cellular amino acid pools containing phosphoserine, phosphothreonine, and phosphotyrosine.

Justin B Steinfeld, Hans R Aerni, Svetlana Rogulina, Yuchen Liu, Jesse Rinehart

Open access · bronzeAbstract readLetter
In one paragraph

Article in ACS chemical biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Soft-metal(loid)s induce protein aggregation inFrontiers in microbiology · 2023
    Article
  9. Competition-cooperation mechanism betweenFrontiers in microbiology · 2023
    Article
  10. Article
  11. PermaPhosbioRxiv : the preprint server for biology · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Generation and characterization of functional phosphoserine-incorporated neuronal nitric oxide synthase holoenzyme.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2019
    Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Justin B SteinfeldDepartment of †Cellular & Molecular Physiology, ‡Systems Biology Institute, and §Molecular Biophysics & Biochemistry, Yale University , New Haven, Connecticut 06520, United States.
Hans R Aerni
Svetlana Rogulina
Yuchen Liu
Jesse Rinehart
Yale University · US

Funding

TRANSFER RNAR01GM022854 · NIGMS · YALE UNIVERSITY · PI SOLL, DIETER · 1985 to 2016
$21.3M
TRANSFER RNAR37GM022854 · NIGMS · YALE UNIVERSITY · PI SOLL, DIETER G · 1991 to 2000
$786k
Investigation of Electrolyte Homeostasis via Quantitative ProteomicsK01DK089006 · NIDDK · YALE UNIVERSITY · PI RINEHART, JESSE · 2010 to 2014
$772k
NIDDK NIH HHS K01 DK089006NIDDK NIH HHS K01DK089006NIGMS NIH HHS GM22854NIGMS NIH HHS R01 GM022854NIGMS NIH HHS R37 GM022854
6 · The paper itself

Abstract

Adding nonstandard amino acids to the genetic code of E. coli expands the chemical and biological functional space for proteins. This is accomplished with engineered, orthogonal aminoacyl-tRNA synthetase and tRNA pairs that require a nonstandard amino acid in sufficient intracellular quantities to support protein synthesis. While cotranslational insertion of phosphoserine into proteins has been accomplished, conditions that modulate intracellular phosphoamino acid concentrations are still poorly understood. Here we used genetic and metabolic engineering to increase the free intracellular levels of phosphoserine in E. coli. We show that deletion of the phosphoserine phosphatase serB elevates the intracellular levels of phosphoserine within ranges comparable to those of standard amino acids. These new conditions improved insertion of phosphoserine into recombinant proteins. Surprisingly, we also observed dramatic increases in intracellular levels of phosphothreonine and phosphotyrosine when WT cells were grown in LB with supplemented phosphothreonine and serB deficient cells were grown in low phosphate media with supplemented phosphotyrosine, respectively. These findings remove a major barrier for further expansion of the genetic code with additional phosphorylated amino acids.

Indexed as

Amino Acyl-tRNA SynthetasesEscherichia coliEscherichia coli ProteinsGene DeletionGenetic EngineeringPhosphoric Monoester HydrolasesPhosphoserinePhosphothreoninePhosphotyrosineRecombinant ProteinsAmino Acyl-tRNA SynthetasesEscherichia coli ProteinsPhosphoric Monoester HydrolasesPhosphoserinephosphoserine phosphatasePhosphothreoninePhosphotyrosineRecombinant Proteins

Identifiers

PMID24646179
PMCPMC4027946
OpenAlexW2331636826

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.