Evidence map›Paper›PMID 24643061›Full record

ArticlePloS one2014

Isl1 and Pou4f2 form a complex to regulate target genes in developing retinal ganglion cells.

Renzhong Li, Fuguo Wu, Raili Ruonala, Darshan Sapkota, Zihua Hu, Xiuqian Mu

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

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  11. Genetic control of retinal ganglion cell genesis.Cellular and molecular life sciences : CMLS · 2021
    Review
  12. Article
  13. Article
  14. Article
  15. On the Generation and Regeneration of Retinal Ganglion Cells.Frontiers in cell and developmental biology · 2020
    Article
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Renzhong LiDepartment of Ophthalmology/Ross Eye Institute, University of Buffalo, Buffalo, New York, United States of America; Developmental Genomics Group, New York State Center of Excellence in Bioinformatics and Life Sciences, University of Buffalo, Buffalo, New York, United States of America; SUNY Eye Institute, University of Buffalo, Buffalo, New York, United States of America.
Fuguo WuDepartment of Ophthalmology/Ross Eye Institute, University of Buffalo, Buffalo, New York, United States of America; Developmental Genomics Group, New York State Center of Excellence in Bioinformatics and Life Sciences, University of Buffalo, Buffalo, New York, United States of America; SUNY Eye Institute, University of Buffalo, Buffalo, New York, United States of America.
Raili RuonalaDepartment of Ophthalmology/Ross Eye Institute, University of Buffalo, Buffalo, New York, United States of America; Developmental Genomics Group, New York State Center of Excellence in Bioinformatics and Life Sciences, University of Buffalo, Buffalo, New York, United States of America; SUNY Eye Institute, University of Buffalo, Buffalo, New York, United States of America.
Darshan SapkotaDepartment of Ophthalmology/Ross Eye Institute, University of Buffalo, Buffalo, New York, United States of America; Department of Biochemistry, University of Buffalo, Buffalo, New York, United States of America; Developmental Genomics Group, New York State Center of Excellence in Bioinformatics and Life Sciences, University of Buffalo, Buffalo, New York, United States of America; SUNY Eye Institute, University of Buffalo, Buffalo, New York, United States of America.
Zihua HuDepartment of Ophthalmology/Ross Eye Institute, University of Buffalo, Buffalo, New York, United States of America; Department of Biostatistics, University of Buffalo, Buffalo, New York, United States of America; Department of Medicine, University of Buffalo, Buffalo, New York, United States of America; Center of Computational Research, New York State Center of Excellence in Bioinformatics and Life Sciences, University of Buffalo, Buffalo, New York, United States of America; SUNY Eye Institute, University of Buffalo, Buffalo, New York, United States of America.
Xiuqian MuDepartment of Ophthalmology/Ross Eye Institute, University of Buffalo, Buffalo, New York, United States of America; Department of Biochemistry, University of Buffalo, Buffalo, New York, United States of America; Developmental Genomics Group, New York State Center of Excellence in Bioinformatics and Life Sciences, University of Buffalo, Buffalo, New York, United States of America; SUNY Eye Institute, University of Buffalo, Buffalo, New York, United States of America; CCSG Cancer Genetics Program, Roswell Park Cancer Institute, Buffalo, New York, United States of America.

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI MARK G FRATTINI · 1985 to 2026
$116.6M
Regulatory mechanisms for retinal ganglion cell genesisR01EY020545 · NEI · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI Xiuqian Mu · 2011 to 2026
$5.7M
NCI NIH HHS P30 CA016056NEI NIH HHS EY020545NEI NIH HHS R01 EY020545
6 · The paper itself

Abstract

Precise regulation of gene expression during biological processes, including development, is often achieved by combinatorial action of multiple transcription factors. The mechanisms by which these factors collaborate are largely not known. We have shown previously that Isl1, a Lim-Homeodomain transcription factor, and Pou4f2, a class IV POU domain transcription factor, co-regulate a set of genes required for retinal ganglion cell (RGC) differentiation. Here we further explore how these two factors interact to precisely regulate gene expression during RGC development. By GST pulldown assays, co-immunoprecipitation, and electrophoretic mobility shift assays, we show that Isl1 and Pou4f2 form a complex in vitro and in vivo, and identify the domains within these two proteins that are responsible for this interaction. By luciferase assay, in situ hybridization, and RNA-seq, we further demonstrate that the two factors contribute quantitatively to gene expression in the developing RGCs. Although each factor alone can activate gene expression, both factors are required to achieve optimal expression levels. Finally, we discover that Isl1 and Pou4f2 can interact with other POU and Lim-Homeodomain factors respectively, indicating the interactions between these two classes of transcription factors are prevalent in development and other biological processes.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsBase SequenceBinding SitesCell DifferentiationElectrophoretic Mobility Shift AssayEmbryo, MammalianHedgehog ProteinsHEK293 CellsHomeodomain ProteinsHumansLIM-Homeodomain ProteinsMiceMice, TransgenicMolecular Sequence DataProtein BindingHedgehog ProteinsHomeodomain Proteinsinsulin gene enhancer binding protein Isl-1LIM-Homeodomain ProteinsPou4f2 protein, mouseShh protein, mouseTranscription Factor Brn-3BTranscription Factors

Identifiers

PMID24643061
PMCPMC3958441

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.