Evidence map›Paper›PMID 24642916›Full record

ArticlePloS one2014

Fine specificity and molecular competition in SLAM family receptor signalling.

Timothy J Wilson, Lee I Garner, Clive Metcalfe, Elliott King, Stefanie Margraf, Marion H Brown

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. SLAM Family Receptors in B Cell Chronic Lymphoproliferative Disorders.International journal of molecular sciences · 2024
    Review
  8. Review
  9. Diacylglycerol Kinase alpha in X Linked Lymphoproliferative Disease Type 1.International journal of molecular sciences · 2021
    Review
  10. Review
  11. Article
  12. Review
  13. Review
  14. Src homology 2 domains enhance tyrosine phosphorylationThe Journal of biological chemistry · 2018
    Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Timothy J WilsonSir William Dunn School of Pathology, University of Oxford, Oxford, United Kingdom.
Lee I GarnerSir William Dunn School of Pathology, University of Oxford, Oxford, United Kingdom.
Clive MetcalfeSir William Dunn School of Pathology, University of Oxford, Oxford, United Kingdom.
Elliott KingSir William Dunn School of Pathology, University of Oxford, Oxford, United Kingdom.
Stefanie MargrafSir William Dunn School of Pathology, University of Oxford, Oxford, United Kingdom.
Marion H BrownSir William Dunn School of Pathology, University of Oxford, Oxford, United Kingdom.
University of Oxford · GB

Funding

Cancer Research UK 13236Cancer Research UK C29938/A13236Medical Research Council G0400808
6 · The paper itself

Abstract

SLAM family receptors regulate activation and inhibition in immunity through recruitment of activating and inhibitory SH2 domain containing proteins to immunoreceptor tyrosine based switch motifs (ITSMs). Binding of the adaptors, SAP and EAT-2 to ITSMs in the cytoplasmic regions of SLAM family receptors is important for activation. We analysed the fine specificity of SLAM family receptor phosphorylated ITSMs and the conserved tyrosine motif in EAT-2 for SH2 domain containing signalling proteins. Consistent with the literature describing dependence of CRACC (SLAMF7) on EAT-2, CRACC bound EAT-2 (KD = 0.003 μM) with approximately 2 orders of magnitude greater affinity than SAP (KD = 0.44 μM). RNA interference in cytotoxicity assays in NK92 cells showed dependence of CRACC on SAP in addition to EAT-2, indicating selectivity of SAP and EAT-2 may depend on the relative concentrations of the two adaptors. The concentration of SAP was four fold higher than EAT-2 in NK92 cells. Compared with SAP, the significance of EAT-2 recruitment and its downstream effectors are not well characterised. We identified PLCγ1 and PLCγ2 as principal binding partners for the EAT-2 tail. Both PLCγ1 and PLCγ2 are functionally important for cytotoxicity in NK92 cells through CD244 (SLAMF4), NTB-A (SLAMF6) and CRACC. Comparison of the specificity of SH2 domains from activating and inhibitory signalling mediators revealed a hierarchy of affinities for CD244 (SLAMF4) ITSMs. While binding of phosphatase SH2 domains to individual ITSMs of CD244 was weak compared with SAP or EAT-2, binding of tandem SH2 domains of SHP-2 to longer peptides containing tandem phosphorylated ITSMs in human CD244 increased the affinity ten fold. The concentration of the tyrosine phosphatase, SHP-2 was in the order of a magnitude higher than the adaptors, SAP and EAT-2. These data demonstrate a mechanism for direct recruitment of phosphatases in inhibitory signalling by ITSMs, while explaining competitive dominance of SAP and EAT-2.

Indexed as

Antigens, CDBinding, CompetitiveBinding SitesCell LineGene Expression RegulationHumansImmunity, InnateImmunoreceptor Tyrosine-Based Activation MotifImmunoreceptor Tyrosine-Based Inhibition MotifKiller Cells, NaturalMolecular Sequence DataPhospholipase C gammaProtein BindingProtein Structure, TertiaryProtein Tyrosine Phosphatase, Non-Receptor Type 11Receptor-Like Protein Tyrosine Phosphatases, Class 3Antigens, CDCD244 protein, humanPhospholipase C gammaProtein Tyrosine Phosphatase, Non-Receptor Type 11PTPN11 protein, humanPTPRH protein, humanReceptor-Like Protein Tyrosine Phosphatases, Class 3Receptors, Cell SurfaceReceptors, ImmunologicSH2D1B protein, humanSignaling Lymphocytic Activation Molecule FamilySignaling Lymphocytic Activation Molecule Family Member 1SLAMF6 protein, humanSLAMF7 protein, humanTranscription Factors

Identifiers

PMID24642916
PMCPMC3958483
OpenAlexW2078739544

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.