Evidence map›Paper›PMID 24642470›Full record

ArticleThe Journal of clinical investigation2014

A common genetic variant within SCN10A modulates cardiac SCN5A expression.

Malou van den Boogaard, Scott Smemo, Ozanna Burnicka-Turek, David E Arnolds, Harmen J G van de Werken, Petra Klous, David McKean, Jochen D Muehlschlegel, Julia Moosmann, Okan Toka and 11 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 113 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
113citing papers in PubMed, 1 pooled it
13.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

113 citing papers in PubMed, 1 synthesis or guideline pooled it, 188 citations in OpenAlex.

  1. Pooled it
  2. Long-term predictors of outcome in Brugada syndrome patients after implantable cardioverter-defibrillator implant.Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology · 2026
    Article
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  5. Review
  6. Article
  7. Article
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  9. Genetic loci responsible for atrioventricular block in children.Frontiers in cell and developmental biology · 2026
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Stem cell models of inherited arrhythmias.Nature cardiovascular research · 2024
    Review
  18. Review
  19. Review
  20. Review

53 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 2 countries.

Malou van den Boogaard
Scott Smemo
Ozanna Burnicka-Turek
David E Arnolds
Harmen J G van de Werken
Petra Klous
David McKean
Jochen D Muehlschlegel
Julia Moosmann
Okan Toka
Xinan H Yang
Tamara T Koopmann
Michiel E Adriaens
Connie R Bezzina
Wouter de Laat
Christine Seidman
J G Seidman
Vincent M Christoffels
Marcelo A Nobrega
Phil Barnett
Ivan P Moskowitz
Pediatrics and Genetics · USHarvard University · USUniversity of Amsterdam · NLBrigham and Women's Hospital · USErasmus MC · NLHubrecht Institute for Developmental Biology and Stem Cell Research · NL

Funding

HARVARD CLINICAL AND TRANSLATIONAL SCIENCE CENTER (UL1)UL1RR025758 · NCRR · HARVARD MEDICAL SCHOOL · PI NADLER, LEE MARSHALL · 2008 to 2011
$91.4M
MULTIDISCIPLINARY CARDIAC SCIENCEST32HL007381 · NHLBI · UNIVERSITY OF CHICAGO · PI JEANNE M DECARA, Yoav Gilad · 1985 to 2026
$12.5M
Mapping Transcriptional Networks in Cardiac DevelopmentU01HL098166 · NHLBI · HARVARD MEDICAL SCHOOL · PI SEIDMAN, JONATHAN G · 2009 to 2014
$9.5M
Defining Pathways from Gene Mutation to Heart FailureR01HL080494 · NHLBI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI CHEN, CHRISTOPHER S, SEIDMAN, CHRISTINE E · 2005 to 2024
$9.4M
Molecular Signaling in Hypertrophic CardiomyopathyR01HL084553 · NHLBI · HARVARD MEDICAL SCHOOL · PI SEIDMAN, JONATHAN G · 2007 to 2022
$5.9M
Transcriptional Control of Cardiac Conduction System Function by T-box GenesR01HL114010 · NHLBI · UNIVERSITY OF CHICAGO · PI MOSKOWITZ, IVAN PAUL, NOBREGA, MARCELO A. · 2012 to 2016
$2.6M
Genetics of gene expression in human left ventricular myocardiumR01HL118266 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI MUEHLSCHLEGEL, JOCHEN DANIEL · 2013 to 2017
$2.3M
NCRR NIH HHS UL1 RR025758NHLBI NIH HHS R01 HL080494NHLBI NIH HHS R01 HL084553NHLBI NIH HHS R01 HL114010NHLBI NIH HHS R01 HL118266NHLBI NIH HHS T32 HL007381NHLBI NIH HHS U01 HL098166
6 · The paper itself

Abstract

Variants in SCN10A, which encodes a voltage-gated sodium channel, are associated with alterations of cardiac conduction parameters and the cardiac rhythm disorder Brugada syndrome; however, it is unclear how SCN10A variants promote dysfunctional cardiac conduction. Here we showed by high-resolution 4C-seq analysis of the Scn10a-Scn5a locus in murine heart tissue that a cardiac enhancer located in Scn10a, encompassing SCN10A functional variant rs6801957, interacts with the promoter of Scn5a, a sodium channel-encoding gene that is critical for cardiac conduction. We observed that SCN5A transcript levels were several orders of magnitude higher than SCN10A transcript levels in both adult human and mouse heart tissue. Analysis of BAC transgenic mouse strains harboring an engineered deletion of the enhancer within Scn10a revealed that the enhancer was essential for Scn5a expression in cardiac tissue. Furthermore, the common SCN10A variant rs6801957 modulated Scn5a expression in the heart. In humans, the SCN10A variant rs6801957, which correlated with slowed conduction, was associated with reduced SCN5A expression. These observations establish a genomic mechanism for how a common genetic variation at SCN10A influences cardiac physiology and predisposes to arrhythmia.

Indexed as

Genetic VariationAdultAnimalsArrhythmias, CardiacEnhancer Elements, GeneticFemaleGene Expression RegulationHeartHumansMaleMiceMice, TransgenicMyocardiumNAV1.5 Voltage-Gated Sodium ChannelNAV1.8 Voltage-Gated Sodium ChannelPolymorphism, Single NucleotideNAV1.5 Voltage-Gated Sodium ChannelNAV1.8 Voltage-Gated Sodium ChannelRNA, MessengerSCN10A protein, humanScn10a protein, mouseSCN5A protein, humanScn5a protein, mouse

Identifiers

PMID24642470
PMCPMC3973109
OpenAlexW1970162068

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.