Evidence map›Paper›PMID 24639548›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Genome-wide activity of unliganded estrogen receptor-α in breast cancer cells.

Livia Caizzi, Giulio Ferrero, Santina Cutrupi, Francesca Cordero, Cecilia Ballaré, Valentina Miano, Stefania Reineri, Laura Ricci, Olivier Friard, Alessandro Testori and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 79 citations in OpenAlex.

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  17. Estrogen Signaling in Bone.Applied sciences (Basel, Switzerland) · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Livia CaizziCenter for Molecular Systems Biology, University of Turin, 10043 Orbassano, Turin, Italy.
Giulio Ferrero
Santina Cutrupi
Francesca Cordero
Cecilia Ballaré
Valentina Miano
Stefania Reineri
Laura Ricci
Olivier Friard
Alessandro Testori
Davide Corà
Michele Caselle
Luciano Di Croce
Michele De Bortoli
University of Turin · ITEnvironment Park · ITPompeu Fabra University · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Estrogen receptor-α (ERα) has central role in hormone-dependent breast cancer and its ligand-induced functions have been extensively characterized. However, evidence exists that ERα has functions that are independent of ligands. In the present work, we investigated the binding of ERα to chromatin in the absence of ligands and its functions on gene regulation. We demonstrated that in MCF7 breast cancer cells unliganded ERα binds to more than 4,000 chromatin sites. Unexpectedly, although almost entirely comprised in the larger group of estrogen-induced binding sites, we found that unliganded-ERα binding is specifically linked to genes with developmental functions, compared with estrogen-induced binding. Moreover, we found that siRNA-mediated down-regulation of ERα in absence of estrogen is accompanied by changes in the expression levels of hundreds of coding and noncoding RNAs. Down-regulated mRNAs showed enrichment in genes related to epithelial cell growth and development. Stable ERα down-regulation using shRNA, which caused cell growth arrest, was accompanied by increased H3K27me3 at ERα binding sites. Finally, we found that FOXA1 and AP2γ binding to several sites is decreased upon ERα silencing, suggesting that unliganded ERα participates, together with other factors, in the maintenance of the luminal-specific cistrome in breast cancer cells.

Indexed as

Binding SitesBreast NeoplasmsCell ProliferationChromatin ImmunoprecipitationEstrogen Receptor alphaFemaleGene OntologyGenome, HumanHumansLigandsMCF-7 CellsPolymerase Chain ReactionRNA, Small InterferingESR1 protein, humanEstrogen Receptor alphaLigandsRNA, Small Interferingchromatin bindingenhancerepigeneticspioneer factorstranscriptome

Identifiers

PMID24639548
PMCPMC3977241
OpenAlexW2088280645

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.