Evidence map›Paper›PMID 24637836›Full record

ArticleNucleus (Austin, Tex.)

Characterization of nuclear pore complex components in fission yeast Schizosaccharomyces pombe.

Haruhiko Asakawa, Hui-Ju Yang, Takaharu G Yamamoto, Chizuru Ohtsuki, Yuji Chikashige, Kumiko Sakata-Sogawa, Makio Tokunaga, Masaaki Iwamoto, Yasushi Hiraoka, Tokuko Haraguchi

Open access · goldAbstract read
In one paragraph

Article in Nucleus (Austin, Tex.). The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 59 citations in OpenAlex.

  1. Evolutionary trajectory for nuclear functions of ciliary transport complex proteins.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Evolution and diversification of the nuclear pore complex.Biochemical Society transactions · 2021
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Breaking the Y.PLoS genetics · 2019
    Article
  13. Evolutionary divergence of the nuclear pore complex from fungi to metazoans.Protein science : a publication of the Protein Society · 2019
    Article
  14. Review
  15. Article
  16. Importin α: functions as a nuclear transport factor and beyond.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2018
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 4 countries.

Haruhiko AsakawaGraduate School of Frontier Biosciences; Osaka University; Suita, Japan.
Hui-Ju YangGraduate School of Frontier Biosciences; Osaka University; Suita, Japan.
Takaharu G YamamotoAdvanced ICT Research Institute Kobe; National Institute of Information and Communications Technology; Kobe, Japan.
Chizuru OhtsukiGraduate School of Frontier Biosciences; Osaka University; Suita, Japan.
Yuji ChikashigeAdvanced ICT Research Institute Kobe; National Institute of Information and Communications Technology; Kobe, Japan; Graduate School of Science; Osaka University; Toyonaka, Japan.
Kumiko Sakata-SogawaDepartment of Biological Information; Graduate School of Bioscience and Biotechnology; Tokyo Institute of Technology; Yokohama, Japan; RIKEN Center for Integrative Medical Sciences (IMS-RCAI); Yokohama, Japan.
Makio TokunagaDepartment of Biological Information; Graduate School of Bioscience and Biotechnology; Tokyo Institute of Technology; Yokohama, Japan; RIKEN Center for Integrative Medical Sciences (IMS-RCAI); Yokohama, Japan.
Masaaki IwamotoAdvanced ICT Research Institute Kobe; National Institute of Information and Communications Technology; Kobe, Japan.
Yasushi HiraokaGraduate School of Frontier Biosciences; Osaka University; Suita, Japan; Advanced ICT Research Institute Kobe; National Institute of Information and Communications Technology; Kobe, Japan; Graduate School of Science; Osaka University; Toyonaka, Japan.
Tokuko HaraguchiGraduate School of Frontier Biosciences; Osaka University; Suita, Japan; Advanced ICT Research Institute Kobe; National Institute of Information and Communications Technology; Kobe, Japan; Graduate School of Science; Osaka University; Toyonaka, Japan.
Osaka University · JPNational Institute of Information and Communications Technology · JPRIKEN Center for Integrative Medical Sciences · JPFrontier Science Foundation · CHGraduate School USA · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The nuclear pore complex (NPC) is an enormous proteinaceous complex composed of multiple copies of about 30 different proteins called nucleoporins. In this study, we analyzed the composition of the NPC in the model organism Schizosaccharomyces pombe using strains in which individual nucleoporins were tagged with GFP. We identified 31 proteins as nucleoporins by their localization to the nuclear periphery. Gene disruption analysis in previous studies coupled with gene disruption analysis in the present study indicates that 15 of these nucleoporins are essential for vegetative cell growth and the other 16 nucleoporins are non-essential. Among the 16 non-essential nucleoporins, 11 are required for normal progression through meiosis and their disruption caused abnormal spore formation or poor spore viability. Based on fluorescence measurements of GFP-fused nucleoporins, we estimated the composition of the NPC in S. pombe and found that the organization of the S. pombe NPC is largely similar to that of other organisms; a single NPC was estimated as being 45.8-47.8 MDa in size. We also used fluorescence measurements of single NPCs and quantitative western blotting to analyze the composition of the Nup107-Nup160 subcomplex, which plays an indispensable role in NPC organization and function. Our analysis revealed low amounts of Nup107 and Nup131 and high amounts of Nup132 in the Nup107-Nup160 subcomplex, suggesting that the composition of this complex in S. pombe may differ from that in S. cerevisiae and humans. Comparative analysis of NPCs in various organisms will lead to a comprehensive understanding of the functional architecture of the NPC.

Indexed as

MeiosisNuclear PoreNuclear Pore Complex ProteinsSchizosaccharomycesSchizosaccharomyces pombe ProteinsSpores, FungalNuclear Pore Complex ProteinsSchizosaccharomyces pombe Proteinsfission yeastfluorescence measurementnuclear envelopenuclear pore complexnucleoporinsNup107-160 complex

Identifiers

PMID24637836
PMCPMC4049921
OpenAlexW2071235247

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.