ArticlePloS one2014
Transcriptomic analysis of the rice white tip nematode, Aphelenchoides besseyi (Nematoda: Aphelenchoididae).
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed, 44 citations in OpenAlex.
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- Advances in Migratory Plant Endoparasitic Nematode Effectors.International journal of molecular sciences · 2024Review
- Transcriptome Analysis ofPlants (Basel, Switzerland) · 2024Article
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- Toxicity ofInternational journal of molecular sciences · 2022Article
- A novel ATPase gene, Ab-atps, plays an important role in the interaction of rice and white tip nematode, Aphelenchoides besseyi.Scientific reports · 2021Article
- Characterization and Functional Importance of Two Glycoside Hydrolase Family 16 Genes from the Rice White Tip NematodeAnimals : an open access journal from MDPI · 2021Article
- Salicylic Acid, Jasmonate, and Ethylene Contribute to Rice Defense Against White Tip NematodesFrontiers in plant science · 2021Article
- RNA-Seq revealed that infection with white tip nematodes could downregulate rice photosynthetic genes.Functional & integrative genomics · 2020Article
- The anti-phytoalexin gene Bx-cathepsin W supports the survival of Bursaphelenchus xylophilus under Pinus massoniana phytoalexin stress.BMC genomics · 2019Article
- Life-stage specific transcriptomes of a migratory endoparasitic plant nematode, Radopholus similis elucidate a different parasitic and life strategy of plant parasitic nematodes.Scientific reports · 2019Article
- Trehalose metabolism genes render rice white tip nematodeThe Journal of experimental biology · 2018Article
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- Trehalose metabolism genes ofBiology open · 2017Article
- De Novo Analysis of the Transcriptome of Meloidogyne enterolobii to Uncover Potential Target Genes for Biological Control.International journal of molecular sciences · 2016Article
- Horizontal gene transfer of acetyltransferases, invertases and chorismate mutases from different bacteria to diverse recipients.BMC evolutionary biology · 2016Article
- De novo transcriptomic analysis of the female and male adults of the blood fluke Schistosoma turkestanicum.Parasites & vectors · 2016Article
- A transcriptomic insight into the infective juvenile stage of the insect parasitic nematode, Heterorhabditis indica.BMC genomics · 2016Article
- Transcriptome Sequencing Identified Genes and Gene Ontologies Associated with Early Freezing Tolerance in Maize.Frontiers in plant science · 2016Article
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Authors and funding
8 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe rice white tip nematode Aphelenchoides besseyi, a devastating nematode whose genome has not been sequenced, is distributed widely throughout almost all the rice-growing regions of the world. The aims of the present study were to define the transcriptome of A. besseyi and to identify parasite-related, mortality-related or host resistance-overcoming genes in this nematode. METHODOLOGY AND PRINCIPAL
findingsUsing Solexa/Illumina sequencing, we profiled the transcriptome of mixed-stage populations of A. besseyi. A total of 51,270 transcripts without gaps were produced based on high-quality clean reads. Of all the A. besseyi transcripts, 9,132 KEGG Orthology assignments were annotated. Carbohydrate-active enzymes of glycoside hydrolases (GHs), glycosyltransferases (GTs), carbohydrate esterases (CEs) and carbohydrate-binding modules (CBMs) were identified. The presence of the A. besseyi GH45 cellulase gene was verified by in situ hybridization. Given that 13 unique A. besseyi potential effector genes were identified from 41 candidate effector homologs, further studies of these homologs are merited. Finally, comparative analyses were conducted between A. besseyi contigs and Caenorhabditis elegans genes to look for orthologs of RNAi phenotypes, neuropeptides and peptidases. CONCLUSIONS AND SIGNIFICANCE: The present results provide comprehensive insight into the genetic makeup of A. besseyi. Many of this species' genes are parasite related, nematode mortality-related or necessary to overcome host resistance. The generated transcriptome dataset of A. besseyi reported here lays the foundation for further studies of the molecular mechanisms related to parasitism and facilitates the development of new control strategies for this species.
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