Evidence map›Paper›PMID 24635121›Full record

ArticleThe Plant journal : for cell and molecular biology2014

Patterns of divergence of a large family of nodule cysteine-rich peptides in accessions of Medicago truncatula.

Sumitha Nallu, Kevin A T Silverstein, Peng Zhou, Nevin D Young, Kathryn A Vandenbosch

Open access · hybridAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
7.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. BacA(SbmA) importer of legume symbiotic NCR peptides: Protein architecture, function, and evolutionary implications.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Genetic Diversity of Transcription Factor Genes inFrontiers in plant science · 2022
    Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Disulfide cross-linking influences symbiotic activities of nodule peptide NCR247.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  16. Rhizobial peptidase HrrP cleaves host-encoded signaling peptides and mediates symbiotic compatibility.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sumitha NalluDepartment of Plant Biology, University of Minnesota, 250 Biological Sciences, 1445 Gortner Avenue, Saint Paul, MN, 55108, USA.
Kevin A T Silverstein
Peng Zhou
Nevin D Young
Kathryn A Vandenbosch
University of Minnesota · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The nodule cysteine-rich (NCR) groups of defensin-like (DEFL) genes are one of the largest gene families expressed in the nodules of some legume plants. They have only been observed in the inverted repeat loss clade (IRLC) of legumes, which includes the model legume Medicago truncatula. NCRs are reported to play an important role in plant-microbe interactions. To understand their diversity we analyzed their expression and sequence polymorphisms among four accessions of M. truncatula. A significant expression and nucleotide variation was observed among the genes. We then used 26 accessions to estimate the selection pressures shaping evolution among the accessions by calculating the nucleotide diversity at non-synonymous and synonymous sites in the coding region. The mature peptides of the orthologous NCRs had signatures of both purifying and diversifying selection pressures, unlike the seed DEFLs, which predominantly exhibited purifying selection. The expression, sequence variation and apparent diversifying selection in NCRs within the Medicago species indicates rapid and recent evolution, and suggests that this family of genes is actively evolving to adapt to different environments and is acquiring new functions.

Indexed as

Genetic VariationCysteineDefensinsGene Expression Regulation, PlantGenes, PlantHost-Pathogen InteractionsMedicago truncatulaMultigene FamilyOligonucleotide Array Sequence AnalysisPeptidesPlant ProteinsPolymorphism, Single NucleotideRegulatory Sequences, Nucleic AcidRoot Nodules, PlantSeedsSinorhizobiumCysteineDefensinsPeptidesPlant Proteinsdiversifying selection in NCRsexpression polymorphism in NCRsMedicago truncatula accessionsNCRsselection pressures on NCRs

Identifiers

PMID24635121
PMCPMC4282536
OpenAlexW2165788997

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.