Evidence map›Paper›PMID 24634214›Full record

ArticleThe Journal of biological chemistry2014

Regulation of RNA polymerase II termination by phosphorylation of Gdown1.

Jiannan Guo, Michael E Turek, David H Price

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Structure of cytoplasmic RNA polymerase II.Nature communications · 2026
    Article
  3. Article
  4. Article
  5. Maintaining Transcriptional Specificity Through Mitosis.Annual review of genomics and human genetics · 2022
    Review
  6. Article
  7. Article
  8. Article
  9. Reconstitution of Pol II (G) responsive form of the human Mediator complex.Turkish journal of biology = Turk biyoloji dergisi · 2021
    Article
  10. Article
  11. Review
  12. Application of the SSB biosensor to study in vitro transcription.Biochemical and biophysical research communications · 2018
    Article
  13. Birth and Death of Histone mRNAs.Trends in genetics : TIG · 2017
    Review
  14. Factor-dependent archaeal transcription termination.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  15. RNA polymerase II pausing as a context-dependent reader of the genome.Biochemistry and cell biology = Biochimie et biologie cellulaire · 2016
    Review
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jiannan GuoFrom the Department of Biochemistry, University of Iowa, Iowa City, Iowa 52242.
Michael E Turek
David H Price
University of Iowa · US

Funding

FACTORS INVOLVED IN TRANSCRIPTION BY RNA POLYMERSASE IIR01GM035500 · NIGMS · UNIVERSITY OF IOWA · PI PRICE, DAVID H · 1985 to 2017
$6.5M
NIGMS NIH HHS GM35500NIGMS NIH HHS R01 GM035500
6 · The paper itself

Abstract

Gdown1 is a substoichiometric subunit of RNA polymerase II (Pol II) that has been recently demonstrated to be involved in stabilizing promoter-proximal paused Pol II. It was shown to inhibit termination of Pol II by transcription termination factor 2 (TTF2) as well as block elongation stimulation by transcription factor IIF (TFIIF). Here, using in vitro transcription assays, we identified two functional domains in Gdown1. Although both are required to maintain a tight association with Pol II, the N- and C-terminal domains are responsible for blocking TTF2 and TFIIF, respectively. A highly conserved LPDKG motif found in the N-terminal domain of Gdown1 is also highly conserved in TTF2. Deletion of this motif eliminated the TTF2 inhibitory activity of Gdown1. We identified a phosphorylated form of Gdown1 with altered mobility in SDS-PAGE that appears during mitosis. A kinase in HeLa nuclear extract that caused the shift was partially purified. In vitro, Gdown1 phosphorylated by this kinase demonstrated reduced activity in blocking both TTF2 and TFIIF because of its reduced affinity for Pol II. Mass spectrometry identified Ser-270 as the site of this phosphorylation. An S270A mutation was not phosphorylated by the partially purified kinase, and an S270E mutation partially mimicked the properties of phospho-Gdown1. Gdown1 Ser-270 phosphorylation occurs predominately during mitosis, and we suggest that this would enable TTF2 to terminate all Pol II even if it is associated with Gdown1.

Indexed as

Transcription Termination, GeneticAdenosine TriphosphatasesAmino Acid MotifsAmino Acid SequenceBinding, CompetitiveBinding SitesBlotting, WesternDNA-Binding ProteinsHeLa CellsHumansMass SpectrometryMitosisMolecular Sequence DataMutationPhosphorylationProtein BindingAdenosine TriphosphatasesDNA-Binding ProteinsPOLR2M protein, humanRNA Polymerase IISerineTranscription FactorsTranscription Factors, TFIItranscription factor TFIIFTTF2 protein, humanGdown1MitosisPhosphorylationRNA Polymerase IITFIIFTranscription Elongation FactorsTranscription TerminationTTF2

Identifiers

PMID24634214
PMCPMC4007455
OpenAlexW2040677908

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.