Evidence map›Paper›PMID 24634209›Full record

ArticleThe Journal of biological chemistry2014

Transcription factor SOX9 plays a key role in the regulation of visual cycle gene expression in the retinal pigment epithelium.

Tomohiro Masuda, Karl Wahlin, Jun Wan, Jianfei Hu, Julien Maruotti, Xue Yang, Jared Iacovelli, Natalie Wolkow, Ralf Kist, Joshua L Dunaief and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 69 citations in OpenAlex.

  1. eLife · 2025
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  15. SOX9 in organogenesis: shared and unique transcriptional functions.Cellular and molecular life sciences : CMLS · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Tomohiro MasudaFrom the Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231.
Karl Wahlin
Jun Wan
Jianfei Hu
Julien Maruotti
Xue Yang
Jared Iacovelli
Natalie Wolkow
Ralf Kist
Joshua L Dunaief
Jiang Qian
Donald J Zack
Noriko Esumi
Johns Hopkins University · USJohns Hopkins Medicine · USPenn Presbyterian Medical Center · USNewcastle University · GBUniversity of Pennsylvania · US

Funding

Institute for Clinical and Translational ResearchUL1TR001079 · NCATS · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2013 to 2017
$60.1M
Wilmer Core Grant for Vision ResearchP30EY001765 · NEI · JOHNS HOPKINS UNIVERSITY · PI Jiang Qian · 1985 to 2026
$22.1M
Retinal Iron Transport in Health and DiseaseR01EY015240 · NEI · UNIVERSITY OF PENNSYLVANIA · PI JOSHUA L DUNAIEF · 2004 to 2026
$10.4M
REGULATION OF RHODOPSIN GENE EXPRESSIONR01EY009769 · NEI · JOHNS HOPKINS UNIVERSITY · PI ZACK, DONALD J. · 1992 to 2014
$8.1M
Molecular Mechanisms Regulating VMD2 ExpressionR01EY016398 · NEI · JOHNS HOPKINS UNIVERSITY · PI ESUMI, NORIKO · 2006 to 2009
$643k
NCATS NIH HHS UL1 TR001079NEI NIH HHS EY001765NEI NIH HHS EY009769NEI NIH HHS EY016398NEI NIH HHS P30 EY001765NEI NIH HHS R01 EY009769NEI NIH HHS R01 EY015240NEI NIH HHS R01 EY016398
6 · The paper itself

Abstract

The retinal pigment epithelium (RPE) performs specialized functions to support retinal photoreceptors, including regeneration of the visual chromophore. Enzymes and carrier proteins in the visual cycle function sequentially to regenerate and continuously supply 11-cis-retinal to retinal photoreceptor cells. However, it is unknown how the expression of the visual cycle genes is coordinated at the transcriptional level. Here, we show that the proximal upstream regions of six visual cycle genes contain chromatin-accessible sex-determining region Y box (SOX) binding sites, that SOX9 and LIM homeobox 2 (LHX2) are coexpressed in the nuclei of mature RPE cells, and that SOX9 acts synergistically with orthodenticle homeobox 2 (OTX2) to activate the RPE65 and retinaldehyde binding protein 1 (RLBP1) promoters and acts synergistically with LHX2 to activate the retinal G protein-coupled receptor (RGR) promoter. ChIP reveals that SOX9 and OTX2 bind to the promoter regions of RPE65, RLBP1, and RGR and that LHX2 binds to those of RPE65 and RGR in bovine RPE. ChIP with human fetal RPE cells shows that SOX9 and OTX2 also bind to the human RPE65, RLBP1, and RGR promoters. Conditional inactivation of Sox9 in mouse RPE results in reduced expression of several visual cycle genes, most dramatically Rpe65 and Rgr. Furthermore, bioinformatic analysis predicts that multiple common microRNAs (miRNAs) regulate visual cycle genes, and cotransfection of miRNA mimics with luciferase reporter constructs validated some of the predicted miRNAs. These results implicate SOX9 as a key regulator of visual cycle genes, reveal for the first time the functional role of LHX2 in the RPE, and suggest the possible regulation of visual cycle genes by common miRNAs.

Indexed as

Gene Expression RegulationAnimalsBinding SitesCarrier ProteinsCell LineCells, CulturedChromatincis-trans-IsomerasesEye ProteinsGene Regulatory NetworksHEK293 CellsHumansImmunohistochemistryLIM-Homeodomain ProteinsMiceMice, Knockout11-cis-retinal-binding proteinCarrier ProteinsChromatincis-trans-IsomerasesEye ProteinsLHX2 protein, humanLIM-Homeodomain ProteinsMicroRNAsOTX2 protein, humanOtx Transcription FactorsRetinoid IsomerohydrolaseSOX9 Transcription FactorTranscription FactorsEyeGene ExpressionGene RegulationMicroRNARetinal Pigment EpitheliumSOX9TranscriptionVisual Cycle

Identifiers

PMID24634209
PMCPMC4007478
OpenAlexW1974699977

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.