Evidence map›Paper›PMID 24634098›Full record

ArticleMagnetic resonance in medicine2015

Diffusion microscopic MRI of the mouse embryo: Protocol and practical implementation in the splotch mouse model.

Francesca C Norris, Bernard M Siow, Jon O Cleary, Jack A Wells, Sandra C P De Castro, Roger J Ordidge, Nicholas D E Greene, Andrew J Copp, Peter J Scambler, Daniel C Alexander and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Magnetic resonance in medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Francesca C NorrisUCL Centre for Advanced Biomedical Imaging, Division of Medicine, University College London, London, United Kingdom; Centre for Mathematics and Physics in the Life Sciences and EXperimental Biology (CoMPLEX), University College London, London, United Kingdom.
Bernard M Siow
Jon O Cleary
Jack A Wells
Sandra C P De Castro
Roger J Ordidge
Nicholas D E Greene
Andrew J Copp
Peter J Scambler
Daniel C Alexander
Mark F Lythgoe
University College London · GBUniversity of Melbourne · AU

Funding

British Heart Foundation MR/J013110/1British Heart Foundation RG/10/13/28570Medical Research Council G0801124Medical Research Council G0802163Medical Research Council MR/J003794/1Medical Research Council MR/J013110/1Wellcome TrustWellcome Trust 087525
6 · The paper itself

Abstract

purposeAdvanced methodologies for visualizing novel tissue contrast are essential for phenotyping the ever-increasing number of mutant mouse embryos being generated. Although diffusion microscopic MRI (μMRI) has been used to phenotype embryos, widespread routine use is limited by extended scanning times, and there is no established experimental procedure ensuring optimal data acquisition.

methodsWe developed two protocols for designing experimental procedures for diffusion μMRI of mouse embryos, which take into account the effect of embryo preparation and pulse sequence parameters on resulting data. We applied our protocols to an investigation of the splotch mouse model as an example implementation.

resultsThe protocols provide DTI data in 24 min per direction at 75 μm isotropic using a three-dimensional fast spin-echo sequence, enabling preliminary imaging in 3 h (6 directions plus one unweighted measurement), or detailed imaging in 9 h (42 directions plus six unweighted measurements). Application to the splotch model enabled assessment of spinal cord pathology.

conclusionWe present guidelines for designing diffusion μMRI experiments, which may be adapted for different studies and research facilities. As they are suitable for routine use and may be readily implemented, we hope they will be adopted by the phenotyping community.

Indexed as

AnimalsDiffusion Magnetic Resonance ImagingEmbryo, MammalianImage EnhancementMagnetic Resonance ImagingMiceMice, Inbred C57BLMice, TransgenicMicroscopyPaired Box Transcription FactorsPAX3 Transcription FactorPrenatal DiagnosisReproducibility of ResultsSensitivity and SpecificitySpecimen HandlingSpinal CordPaired Box Transcription FactorsPax3 protein, mousePAX3 Transcription Factordiffusion microscopic magnetic resonance imagingmouse embryophenotypingspina bifidasplotch mouse model

Identifiers

PMID24634098
PMCPMC4737188
OpenAlexW1589485782

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.