Evidence map›Paper›PMID 24633409›Full record

ArticleNature methods2014

Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers.

Johan Hattne, Nathaniel Echols, Rosalie Tran, Jan Kern, Richard J Gildea, Aaron S Brewster, Roberto Alonso-Mori, Carina Glöckner, Julia Hellmich, Hartawan Laksmono and 31 more

Erratum issuedAbstract read
In one paragraph

Article in Nature methods, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 105 papers.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. bioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Robust error calibration for serial crystallography.Acta crystallographica. Section D, Structural biology · 2025
    Article
  9. Article
  10. Article
  11. A snapshot love story: what serial crystallography has done and will do for us.Acta crystallographica. Section D, Structural biology · 2024
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article

45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

41 authors.

Johan HattnePhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Nathaniel EcholsPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Rosalie TranPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Jan KernPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Richard J Gildea1] Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA. [2].
Aaron S BrewsterPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Roberto Alonso-MoriLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California, USA.ORCID 0000000253570934
Carina GlöcknerMax-Volmer-Laboratorium für Biophysikalische Chemie, Technische Universität, Berlin, Germany.
Julia HellmichMax-Volmer-Laboratorium für Biophysikalische Chemie, Technische Universität, Berlin, Germany.
Hartawan LaksmonoStanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Raymond G SierraStanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Benedikt Lassalle-KaiserPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Alyssa LampePhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Guangye HanPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Sheraz GulPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Dörte DiFioreMax-Volmer-Laboratorium für Biophysikalische Chemie, Technische Universität, Berlin, Germany.
Despina MilathianakiLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Alan R FryLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Alan MiahnahriLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California, USA.
William E WhiteLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Donald W SchaferLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California, USA.
M Marvin SeibertLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Jason E KoglinLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Dimosthenis SokarasStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Tsu-Chien WengStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Jonas Sellberg1] Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, California, USA. [2] Department of Physics, AlbaNova, Stockholm University, Stockholm, Sweden.
Matthew J LatimerStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Pieter GlatzelEuropean Synchrotron Radiation Facility, Grenoble, France.
Petrus H ZwartPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Ralf W Grosse-KunstlevePhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Michael J Bogan1] Linac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California, USA. [2] Stanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Marc MesserschmidtLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Garth J WilliamsLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Sébastien BoutetLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Johannes MessingerInstitutionen för Kemi, Kemiskt Biologiskt Centrum, Umeå Universitet, Umeå, Sweden.
Athina Zouni1] Max-Volmer-Laboratorium für Biophysikalische Chemie, Technische Universität, Berlin, Germany. [2] Institut für Biologie, Humboldt Universität zu Berlin, Berlin, Germany.
Junko YanoPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Uwe BergmannLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Vittal K YachandraPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Paul D AdamsPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Nicholas K SauterPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Taking Snapshots of the Water-Oxidation Reaction by the Mn4Ca Oxygen-Evolving Complex Using X-ray Crystallography and SpectroscopyR01GM055302 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI YACHANDRA, VITTAL · 1997 to 2022
$9.1M
Biological Spectroscopy and Crystallography Using an X-ray Free Electron Laser - Supplemental EquipmentR01GM110501 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Junko Yano · 2014 to 2026
$4.8M
Realizing New Horizons in X-ray Crystallography Data ProcessingR01GM095887 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI SAUTER, NICHOLAS K · 2011 to 2014
$1.5M
Towards real-time XFEL data reduction with CCTBXR01GM102520 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI SAUTER, NICHOLAS K · 2012 to 2015
$1.4M
Structure and Function of the Mn Oxygen-Evolving ComplexR56GM055302 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI YACHANDRA, VITTAL · 2009 to 2009
$530k
NIGMS NIH HHS GM055302NIGMS NIH HHS GM095887NIGMS NIH HHS GM102520NIGMS NIH HHS P41 GM103393NIGMS NIH HHS P41GM103393NIGMS NIH HHS R01 GM055302NIGMS NIH HHS R01 GM095887NIGMS NIH HHS R01 GM102520NIGMS NIH HHS R01 GM110501NIGMS NIH HHS R56 GM055302
6 · The paper itself

Abstract

X-ray free-electron laser (XFEL) sources enable the use of crystallography to solve three-dimensional macromolecular structures under native conditions and without radiation damage. Results to date, however, have been limited by the challenge of deriving accurate Bragg intensities from a heterogeneous population of microcrystals, while at the same time modeling the X-ray spectrum and detector geometry. Here we present a computational approach designed to extract meaningful high-resolution signals from fewer diffraction measurements.

Indexed as

LasersBacillusCalciumCalibrationComputer SimulationCrystallizationCrystallography, X-RayElectronsEquipment DesignLikelihood FunctionsMacromolecular SubstancesModels, ChemicalMolecular ConformationMuramidaseNanotechnologyReproducibility of ResultsCalciumMacromolecular SubstancesMuramidaseThermolysinZinc

Identifiers

PMID24633409
PMCPMC4008696

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.