Evidence map›Paper›PMID 24632576›Full record

ArticlePloS one2014

An A91V SNP in the perforin gene is frequently found in NK/T-cell lymphomas.

Rebeca Manso, Socorro María Rodríguez-Pinilla, Luis Lombardia, Gorka Ruiz de Garibay, Maria Del Mar López, Luis Requena, Lydia Sánchez, Margarita Sánchez-Beato, Miguel Ángel Piris

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Mutational profile and EBV strains of extranodal NK/T-cell lymphoma, nasal type in Latin America.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2020
    Article
  8. Review
  9. Cutaneous EBV-related lymphoproliferative disorders.Seminars in diagnostic pathology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Rebeca MansoPathology Department, Fundación Jiménez Díaz, Madrid, Spain.
Socorro María Rodríguez-PinillaPathology Department, Fundación Jiménez Díaz, Madrid, Spain; Molecular Pathology Programme, Lymphoma Group, CNIO, Madrid, Spain.
Luis LombardiaClinical Research Programme, Molecular Diagnostics Clinical Research Unit, CNIO, Madrid, Spain.
Gorka Ruiz de GaribayMolecular Pathology Programme, Lymphoma Group, CNIO, Madrid, Spain; Clinical Immunology Department, Hospital Clínico de San Carlos, Madrid, Spain.
Maria Del Mar LópezMolecular Pathology Programme, Lymphoma Group, CNIO, Madrid, Spain; Biotechnology Programme, Monoclonal Antibodies Unit, CNIO, Madrid, Spain.
Luis RequenaDermatology Department, Fundación Jimenez Díaz, Madrid, Spain.
Lydia SánchezBiotechnology Programme, Immunohistochemistry Unit, CNIO, Madrid, Spain.
Margarita Sánchez-BeatoMolecular Pathology Programme, Lymphoma Group, CNIO, Madrid, Spain; Oncology-Haematology Area, Instituto Investigación Sanitaria, Hospital Universitario Puerta de Hierro-Majadahonda, Madrid, Spain.
Miguel Ángel PirisMolecular Pathology Programme, Lymphoma Group, CNIO, Madrid, Spain; Pathology Department, Hospital Universitario Marqués de Valdecilla, Universidad de Cantabria, IFIMAV, Santander, Spain.
Hospital Universitario Fundación Jiménez Díaz · ESHospital Clínico San Carlos · ESHospital Universitario Puerta de Hierro Majadahonda · ESSpanish National Cancer Research Centre · ESUniversidad de Cantabria · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

NK/T-cell lymphoma (NKTCL) is the most frequent EBV-related NK/T-cell disease. Its clinical manifestations overlap with those of familial haemophagocytic lymphohistiocytosis (FHLH). Since PERFORIN (PRF1) mutations are present in FHLH, we analysed its role in a series of 12 nasal and 12 extranasal-NKTCLs. 12.5% of the tumours and 25% of the nasal-origin cases had the well-known g.272C>T(p.Ala91Val) pathogenic SNP, which confers a poor prognosis. Two of these cases had a double-CD4/CD8-positive immunophenotype, although no correlation was found with perforin protein expression. p53 was overexpressed in 20% of the tumoral samples, 80% of which were of extranasal origin, while none showed PRF1 SNVs. These results suggest that nasal and extranasal NKTCLs have different biological backgrounds, although this requires validation.

Indexed as

Polymorphism, Single NucleotideAdultAgedAged, 80 and overAllelesAmino Acid SubstitutionFemaleGenotypeHumansImmunohistochemistryIn Situ HybridizationLymphoma, Extranodal NK-T-CellMaleMiddle AgedMutationPerforinPerforinPore Forming Cytotoxic ProteinsPRF1 protein, human

Identifiers

PMID24632576
PMCPMC3954696
OpenAlexW1595028455

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.