Evidence map›Paper›PMID 24632473›Full record

ArticleBiochimica et biophysica acta2014

PSF contacts exon 7 of SMN2 pre-mRNA to promote exon 7 inclusion.

Sunghee Cho, Heegyum Moon, Tiing Jen Loh, Hyun Kyung Oh, Darren Reese Williams, D Joshua Liao, Jianhua Zhou, Michael R Green, Xuexiu Zheng, Haihong Shen

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Regulation of Survival Motor Neuron Gene Expression by Calcium Signaling.International journal of molecular sciences · 2021
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  19. PSF: nuclear busy-body or nuclear facilitator?Wiley interdisciplinary reviews. RNA
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Sunghee ChoSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju 500-712, Republic of Korea.
Heegyum MoonSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju 500-712, Republic of Korea.
Tiing Jen LohSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju 500-712, Republic of Korea.
Hyun Kyung OhSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju 500-712, Republic of Korea.
Darren Reese WilliamsSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju 500-712, Republic of Korea.
D Joshua LiaoHormel Institute, University of Minnesota, Austin, MN, USA.
Jianhua ZhouNantong University, Nantong, China.
Michael R GreenHoward Hughes Medical Institute and Programs in Gene Function and Expression and Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Xuexiu ZhengSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju 500-712, Republic of Korea.
Haihong ShenSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju 500-712, Republic of Korea. Electronic address: haihongshen@gist.ac.kr.
Gwangju Institute of Science and Technology · KRNantong University · CNUniversity of Massachusetts Chan Medical School · USUniversity of Minnesota · US

Funding

SPLICING OF MRNA PRECURSORSR01GM035490 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GREEN, MICHAEL R · 1985 to 2021
$4.7M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM035490
6 · The paper itself

Abstract

Spinal muscular atrophy (SMA) is an autosomal recessive genetic disease and a leading cause of infant mortality. Deletions or mutations of SMN1 cause SMA, a gene that encodes a SMN protein. SMN is important for the assembly of Sm proteins onto UsnRNA to UsnRNP. SMN has also been suggested to direct axonal transport of β-actin mRNA in neurons. Humans contain a second SMN gene called SMN2 thus SMA patients produce some SMN but not with sufficient levels. The majority of SMN2 mRNA does not include exon 7. Here we show that increased expression of PSF promotes inclusion of exon 7 in the SMN2 whereas reduced expression of PSF promotes exon 7 skipping. In addition, we present evidence showing that PSF interacts with the GAAGGA enhancer in exon 7. We also demonstrate that a mutation in this enhancer abolishes the effects of PSF on exon 7 splicing. Furthermore we show that the RNA target sequences of PSF and tra2β in exon 7 are partially overlapped. These results lead us to conclude that PSF interacts with an enhancer in exon 7 to promote exon 7 splicing of SMN2 pre-mRNA.

Indexed as

Gene Expression Regulation, NeoplasticBlotting, WesternDNA PrimersExonsHumansLuciferasesNeuroblastomaPTB-Associated Splicing FactorReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionRNA-Binding ProteinsRNA, MessengerRNA PrecursorsRNA, Small InterferingSurvival of Motor Neuron 2 ProteinTumor Cells, CulturedDNA PrimersLuciferasesPTB-Associated Splicing FactorRNA-Binding ProteinsRNA, MessengerRNA PrecursorsRNA, Small InterferingSMN2 protein, humanSurvival of Motor Neuron 2 ProteinEnhancerExon 7 splicingPSFRNA splicingSpinal muscular atrophy

Identifiers

PMID24632473
PMCPMC4542050
OpenAlexW2053428226

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.