Evidence map›Paper›PMID 24632078›Full record

ArticleJournal of biomedical informatics2014

A hierarchical knowledge-based approach for retrieving similar medical images described with semantic annotations.

Camille Kurtz, Christopher F Beaulieu, Sandy Napel, Daniel L Rubin

Abstract read
In one paragraph

Article in Journal of biomedical informatics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. The topology of data: opportunities for cancer research.Bioinformatics (Oxford, England) · 2021
    Article
  3. Article
  4. Review
  5. A new method for the automatic retrieval of medical cases based on the RadLex ontology.International journal of computer assisted radiology and surgery · 2017
    Article
  6. Article
  7. Article
4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Camille KurtzDepartment of Radiology, School of Medicine, Stanford University, USA; LIPADE (EA 2517), University Paris Descartes, France. Electronic address: camille.kurtz@parisdescartes.fr.
Christopher F BeaulieuDepartment of Radiology, School of Medicine, Stanford University, USA.
Sandy NapelDepartment of Radiology, School of Medicine, Stanford University, USA.
Daniel L RubinDepartment of Radiology, School of Medicine, Stanford University, USA. Electronic address: dlrubin@stanford.edu.

Funding

Tools for Linking and Mining image and Genomic Data in Non-Small Cell Lung CancerR01CA160251 · NCI · STANFORD UNIVERSITY · PI NAPEL, SANDY A., PLEVRITIS, SYLVIA KATINA · 2011 to 2015
$2.9M
Computerized Quantitative Imaging Assessment of Tumor BurdenU01CA142555 · NCI · STANFORD UNIVERSITY · PI RUBIN, DANIEL L · 2010 to 2014
$2.9M
NCI NIH HHS R01 CA160251NCI NIH HHS R01-CA160251NCI NIH HHS U01 CA142555NCI NIH HHS U01CA142555-01
6 · The paper itself

Abstract

Computer-assisted image retrieval applications could assist radiologist interpretations by identifying similar images in large archives as a means to providing decision support. However, the semantic gap between low-level image features and their high level semantics may impair the system performances. Indeed, it can be challenging to comprehensively characterize the images using low-level imaging features to fully capture the visual appearance of diseases on images, and recently the use of semantic terms has been advocated to provide semantic descriptions of the visual contents of images. However, most of the existing image retrieval strategies do not consider the intrinsic properties of these terms during the comparison of the images beyond treating them as simple binary (presence/absence) features. We propose a new framework that includes semantic features in images and that enables retrieval of similar images in large databases based on their semantic relations. It is based on two main steps: (1) annotation of the images with semantic terms extracted from an ontology, and (2) evaluation of the similarity of image pairs by computing the similarity between the terms using the Hierarchical Semantic-Based Distance (HSBD) coupled to an ontological measure. The combination of these two steps provides a means of capturing the semantic correlations among the terms used to characterize the images that can be considered as a potential solution to deal with the semantic gap problem. We validate this approach in the context of the retrieval and the classification of 2D regions of interest (ROIs) extracted from computed tomographic (CT) images of the liver. Under this framework, retrieval accuracy of more than 0.96 was obtained on a 30-images dataset using the Normalized Discounted Cumulative Gain (NDCG) index that is a standard technique used to measure the effectiveness of information retrieval algorithms when a separate reference standard is available. Classification results of more than 95% were obtained on a 77-images dataset. For comparison purpose, the use of the Earth Mover's Distance (EMD), which is an alternative distance metric that considers all the existing relations among the terms, led to results retrieval accuracy of 0.95 and classification results of 93% with a higher computational cost. The results provided by the presented framework are competitive with the state-of-the-art and emphasize the usefulness of the proposed methodology for radiology image retrieval and classification.

Indexed as

Information Storage and RetrievalKnowledge BasesSemanticsTomography, X-Ray ComputedComputed tomographic (CT) imagesImage retrievalLiver lesionsOntologiesSemantic-based distancesSemantic image annotation

Identifiers

PMID24632078
PMCPMC4058405

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.