Evidence map›Paper›PMID 24629525›Full record

ArticleMicrobiological research

Differential contribution of the proline and glutamine pathways to glutamate biosynthesis and nitrogen assimilation in yeast lacking glutamate dehydrogenase.

Alex G Sieg, Pamela J Trotter

Abstract read
In one paragraph

Article in Microbiological research. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact, top 91% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
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    Article
  8. Article
  9. Article
  10. Review
  11. A metabolomic study of the effect ofNPJ biofilms and microbiomes
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Alex G SiegGuehler Biochemistry Laboratory, Department of Chemistry, Augustana College, 639-38th Street, Rock Island, IL 61201, United States.
Pamela J TrotterGuehler Biochemistry Laboratory, Department of Chemistry, Augustana College, 639-38th Street, Rock Island, IL 61201, United States. Electronic address: pamtrotter@augustana.edu.
Augustana College · US

Funding

Yeast Mitochondrial Transporters Involved in Glutamate and Fatty Acid MetabolismR15GM069372 · NIGMS · AUGUSTANA COLLEGE · PI TROTTER, PAMELA J · 2004 to 2008
$359k
NIGMS NIH HHS R15 GM069372NIGMS NIH HHS R15-GM069372
6 · The paper itself

Abstract

In Saccharomyces cerevisiae, the glutamate dehydrogenase (GDH) enzymes play a pivotal role in glutamate biosynthesis and nitrogen assimilation. It has been proposed that, in GDH-deficient yeast, either the proline utilization (PUT) or the glutamine synthetase-glutamate synthase (GS/GOGAT) pathway serves as the alternative pathway for glutamate production and nitrogen assimilation to the exclusion of the other. Using a gdh-null mutant (gdh1Δ2Δ3Δ), this ambiguity was addressed using a combination of growth studies and pathway-specific enzyme assays on a variety of nitrogen sources (ammonia, glutamine, proline and urea). The GDH-null mutant was viable on all nitrogen sources tested, confirming that alternate pathways for nitrogen assimilation exist in the gdh-null strain. Enzyme assays point to GS/GOGAT as the primary alternative pathway on the preferred nitrogen sources ammonia and glutamine, whereas growth on proline required both the PUT and GS/GOGAT pathways. In contrast, growth on glucose-urea media elicited a decrease in GOGAT activity along with an increase in activity of the PUT pathway specific enzyme Δ(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH). Together, these results suggest the alternative pathway for nitrogen assimilation in strains lacking the preferred GDH-dependent route is nitrogen source dependent and that neither GS/GOGAT nor PUT serves as the sole compensatory pathway.

Indexed as

Culture MediaGene DeletionGlutamate DehydrogenaseGlutamatesGlutamineMetabolic Flux AnalysisMetabolic Networks and PathwaysNitrogenProlineSaccharomyces cerevisiaeCulture MediaGlutamate DehydrogenaseGlutamatesGlutamineNitrogenProlineGlutamate dehydrogenaseNitrogen assimilationSaccharomyces cerevisiaeYeast

Identifiers

PMID24629525
PMCPMC4115011
OpenAlexW2048328866

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.