Evidence map›Paper›PMID 24627342›Full record

ArticlePlant physiology2014

Unraveling vitamin B12-responsive gene regulation in algae.

Katherine E Helliwell, Mark A Scaife, Severin Sasso, Ana Paula Ulian Araujo, Saul Purton, Alison G Smith

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Plant organellar RNA maturation.The Plant cell · 2023
    Review
  9. Article
  10. Review
  11. Article
  12. Biocircuits in plants and eukaryotic algae.Frontiers in plant science · 2022
    Review
  13. Article
  14. Review
  15. Advantages of Heterotrophic Microalgae as a Host for Phytochemicals Production.Frontiers in bioengineering and biotechnology · 2021
    Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Katherine E HelliwellDepartment of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom.
Mark A Scaife
Severin Sasso
Ana Paula Ulian Araujo
Saul Purton
Alison G Smith
University of Cambridge · GBFriedrich Schiller University Jena · DEUCL Australia · AU

Funding

Biotechnology and Biological Sciences Research Council BB/D011043/1Biotechnology and Biological Sciences Research Council BB/I013164/1
6 · The paper itself

Abstract

Photosynthetic microalgae play a vital role in primary productivity and biogeochemical cycling in both marine and freshwater systems across the globe. However, the growth of these cosmopolitan organisms depends on the bioavailability of nutrients such as vitamins. Approximately one-half of all microalgal species requires vitamin B12 as a growth supplement. The major determinant of algal B12 requirements is defined by the isoform of methionine synthase possessed by an alga, such that the presence of the B12-independent methionine synthase (METE) enables growth without this vitamin. Moreover, the widespread but phylogenetically unrelated distribution of B12 auxotrophy across the algal lineages suggests that the METE gene has been lost multiple times in evolution. Given that METE expression is repressed by the presence of B12, prolonged repression by a reliable source of the vitamin could lead to the accumulation of mutations and eventually gene loss. Here, we probe METE gene regulation by B12 and methionine/folate cycle metabolites in both marine and freshwater microalgal species. In addition, we identify a B12-responsive element of Chlamydomonas reinhardtii METE using a reporter gene approach. We show that complete repression of the reporter occurs via a region spanning -574 to -90 bp upstream of the METE start codon. A proteomics study reveals that two other genes (S-Adenosylhomocysteine hydrolase and Serine hydroxymethyltransferase2) involved in the methionine-folate cycle are also repressed by B12 in C. reinhardtii. The strong repressible nature and high sensitivity of the B12-responsive element has promising biotechnological applications as a cost-effective regulatory gene expression tool.

Indexed as

5-Methyltetrahydrofolate-Homocysteine S-MethyltransferaseAmino Acid SequenceChlamydomonasGene Expression Regulation, PlantGenes, ReporterMicroalgaeMolecular Sequence DataProteomicsResponse ElementsVitamin B 125-Methyltetrahydrofolate-Homocysteine S-MethyltransferaseVitamin B 12

Identifiers

PMID24627342
PMCPMC4012597
OpenAlexW2098616980

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.