Evidence map›Paper›PMID 24625979›Full record

ArticleCell death & disease2014

PDR-1/hParkin negatively regulates the phagocytosis of apoptotic cell corpses in Caenorhabditis elegans.

J Cabello, J Sämann, E Gómez-Orte, T Erazo, A Coppa, A Pujol, I Büssing, B Schulze, J M Lizcano, I Ferrer and 2 more

Open access · goldAbstract read
In one paragraph

Article in Cell death & disease, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. The Ubiquitin-Proteasome System in Apoptosis and Apoptotic Cell Clearance.Frontiers in cell and developmental biology · 2022
    Review
  3. Fluorescent reporter ofOpen research Europe · 2022
    Article
  4. Review
  5. Article
  6. CYK-4 regulates Rac, but not Rho, during cytokinesis.Molecular biology of the cell · 2017
    Article
  7. Control of developmental networks by Rac/Rho small GTPases: How cytoskeletal changes during embryogenesis are orchestrated.BioEssays : news and reviews in molecular, cellular and developmental biology · 2016
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

J CabelloCIBIR (Centre for Biomedical Research of La Rioja), C/Piqueras 98, Logroño 26006, Spain.
J SämannBioinformatics and Molecular Genetics (Faculty of Biology), Center for Biochemistry and Molecular Cell Research (Faculty of Medicine), Schänzlestrasse 1, Freiburg 79104, Germany.
E Gómez-OrteCIBIR (Centre for Biomedical Research of La Rioja), C/Piqueras 98, Logroño 26006, Spain.
T ErazoInstitut de Neurociències, Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Cerdanyola del Vallés, Barcelona 08193, Spain.
A CoppaNeurometabolic Diseases Laboratory, Institut D'Investigació Biomèdica de Bellvitge (IDIBELL), Hospital Duran i Reynals, L'Hospitalet de Llobregat, Barcelona 08907, Spain.
A Pujol1] Neurometabolic Diseases Laboratory, Institut D'Investigació Biomèdica de Bellvitge (IDIBELL), Hospital Duran i Reynals, L'Hospitalet de Llobregat, Barcelona 08907, Spain [2] ICREA (Institució Catalana de Recerca i Estudis avançats), Barcelona, Spain [3] Institute of Neuropathology, University Hospitall Bellvitge - University of Barcelona - IDIBELL, L'Hospitalet de Llobregat, Ciberned, Spain [4] CIBERER (Centro de Investigación Biomédica en Enfermedades Raras), C/ Álvaro de Bazán, 10 Bajo, Valencia 46010, Spain.
I BüssingBioinformatics and Molecular Genetics (Faculty of Biology), Center for Biochemistry and Molecular Cell Research (Faculty of Medicine), Schänzlestrasse 1, Freiburg 79104, Germany.
B SchulzeBioinformatics and Molecular Genetics (Faculty of Biology), Center for Biochemistry and Molecular Cell Research (Faculty of Medicine), Schänzlestrasse 1, Freiburg 79104, Germany.
J M LizcanoInstitut de Neurociències, Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Cerdanyola del Vallés, Barcelona 08193, Spain.
I FerrerInstitute of Neuropathology, University Hospitall Bellvitge - University of Barcelona - IDIBELL, L'Hospitalet de Llobregat, Ciberned, Spain.
R Baumeister1] Bioinformatics and Molecular Genetics (Faculty of Biology), Center for Biochemistry and Molecular Cell Research (Faculty of Medicine), Schänzlestrasse 1, Freiburg 79104, Germany [2] Centre for Biological Signaling Studies (bioss), University of Freiburg, Freiburg 79104, Germany [3] FRIAS Freiburg Institute for Advanced Studies, Section Life Sciences (LIFENET), University of Freiburg, Schaenzlestrasse 1, Freiburg 79104, Germany.
E Dalfo1] Bioinformatics and Molecular Genetics (Faculty of Biology), Center for Biochemistry and Molecular Cell Research (Faculty of Medicine), Schänzlestrasse 1, Freiburg 79104, Germany [2] Neurometabolic Diseases Laboratory, Institut D'Investigació Biomèdica de Bellvitge (IDIBELL), Hospital Duran i Reynals, L'Hospitalet de Llobregat, Barcelona 08907, Spain [3] Institute of Neuropathology, University Hospitall Bellvitge - University of Barcelona - IDIBELL, L'Hospitalet de Llobregat, Ciberned, Spain [4] CIBERER (Centro de Investigación Biomédica en Enfermedades Raras), C/ Álvaro de Bazán, 10 Bajo, Valencia 46010, Spain.
Institut d'Investigació Biomédica de Bellvitge · ESCenter for Biomedical Research of La Rioja · ESUniversitat Autònoma de Barcelona · ESUniversitat de Barcelona · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Apoptotic cell death is an integral part of cell turnover in many tissues, and proper corpse clearance is vital to maintaining tissue homeostasis in all multicellular organisms. Even in tissues with high cellular turnover, apoptotic cells are rarely seen because of efficient clearance mechanisms in healthy individuals. In Caenorhabditis elegans, two parallel and partly redundant conserved pathways act in cell corpse engulfment. The pathway for cytoskeletal rearrangement requires the small GTPase CED-10 Rac1 acting for an efficient surround of the dead cell. The CED-10 Rac pathway is also required for the proper migration of the distal tip cells (DTCs) during the development of the C. elegans gonad. Parkin, the mammalian homolog of the C. elegans PDR-1, interacts with Rac1 in aged human brain and it is also implicated with actin dynamics and cytoskeletal rearrangements in Parkinsons's disease, suggesting that it might act on engulfment. Our genetic and biochemical studies indicate that PDR-1 inhibits apoptotic cell engulfment and DTC migration by ubiquitylating CED-10 for degradation.

Indexed as

ApoptosisPhagocytosisAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCell MovementHEK293 CellsHumansMutationProteasome Endopeptidase ComplexProteasome InhibitorsProteolysisrac1 GTP-Binding Proteinrac GTP-Binding ProteinsSignal TransductionTransfectionCaenorhabditis elegans ProteinsCED-10 protein, C elegansparkin proteinProteasome Endopeptidase ComplexProteasome Inhibitorsrac1 GTP-Binding ProteinRAC1 protein, humanrac GTP-Binding ProteinsUbiquitin-Protein Ligases

Identifiers

PMID24625979
PMCPMC3973248
OpenAlexW2005981203

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.