Evidence map›Paper›PMID 24623472›Full record

ArticleProtein science : a publication of the Protein Society2014

A synthetic biochemistry system for the in vitro production of isoprene from glycolysis intermediates.

Tyler P Korman, Bobby Sahachartsiri, Dan Li, Jeffrey M Vinokur, David Eisenberg, James U Bowie

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Review
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  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Cell-free biosynthesis of limonene using enzyme-enrichedSynthetic biology (Oxford, England) · 2019
    Article
  11. Article
  12. Article
  13. Modules forSynthetic and systems biotechnology · 2017
    Review
  14. Article
  15. Biomanufacturing: history and perspective.Journal of industrial microbiology & biotechnology · 2017
    Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Tyler P KormanDepartment of Chemistry and Biochemistry, UCLA-DOE Institute for Genomics and Proteomics, Molecular Biology Institute, University of California, Los Angeles, California.
Bobby Sahachartsiri
Dan Li
Jeffrey M Vinokur
David Eisenberg
James U Bowie
University of California, Los Angeles · USZero to Three · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The high yields required for the economical production of chemicals and fuels using microbes can be difficult to achieve due to the complexities of cellular metabolism. An alternative to performing biochemical transformations in microbes is to build biochemical pathways in vitro, an approach we call synthetic biochemistry. Here we test whether the full mevalonate pathway can be reconstituted in vitro and used to produce the commodity chemical isoprene. We construct an in vitro synthetic biochemical pathway that uses the carbon and ATP produced from the glycolysis intermediate phosphoenolpyruvate to run the mevalonate pathway. The system involves 12 enzymes to perform the complex transformation, while providing and balancing the ATP, NADPH, and acetyl-CoA cofactors. The optimized system produces isoprene from phosphoenolpyruvate in ∼100% molar yield. Thus, by inserting the isoprene pathway into previously developed glycolysis modules it may be possible to produce isoprene and other acetyl-CoA derived isoprenoids from glucose in vitro.

Indexed as

Biosynthetic PathwaysGlycolysisAcetyl Coenzyme AAdenosine TriphosphateButadienesEscherichia coliGreen Chemistry TechnologyHemiterpenesMetabolic EngineeringMevalonic AcidNADPPentanesPhosphoenolpyruvatePyruvic AcidAcetyl Coenzyme AAdenosine TriphosphateButadienesHemiterpenesisopreneMevalonic AcidNADPPentanesPhosphoenolpyruvatePyruvic Acidbiofuelcommodity chemicalsgreen chemistryin vitro synthesisisoprenoidsmetabolic engineering

Identifiers

PMID24623472
PMCPMC4005709
OpenAlexW2114505260

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.