Evidence map›Paper›PMID 24623438›Full record

ArticleJournal of virology2014

Hepatitis C virus NS5A hijacks ARFGAP1 to maintain a phosphatidylinositol 4-phosphate-enriched microenvironment.

Hongyan Li, Xiaojie Yang, Guangbo Yang, Zhi Hong, Liya Zhou, Peiqi Yin, Yan Xiao, Lingyi Chen, Raymond T Chung, Leiliang Zhang

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
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  8. Article
  9. Viral journeys on the intracellular highways.Cellular and molecular life sciences : CMLS · 2018
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. A role for retromer in hepatitis C virus replication.Cellular and molecular life sciences : CMLS · 2016
    Article
  18. Host restriction factors for hepatitis C virus.World journal of gastroenterology · 2016
    Review
  19. Review
  20. Riding the R Train into the Cell.PLoS pathogens · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Hongyan LiMOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China.
Xiaojie Yang
Guangbo Yang
Zhi Hong
Liya Zhou
Peiqi Yin
Yan Xiao
Lingyi Chen
Raymond T Chung
Leiliang Zhang
Chinese Academy of Medical Sciences & Peking Union Medical College · CNHarvard University · USNankai University · CN

Funding

Virology CoreU19AI082630 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI RAYMOND T CHUNG, GEORG Michael LAUER · 2009 to 2026
$48.1M
NIAID NIH HHS AI082630NIAID NIH HHS U19 AI082630
6 · The paper itself

Abstract

unlabelledPhosphatidylinositol 4-phosphate (PI4P) is well known to be upregulated during hepatitis C virus (HCV) replication. The role of PI4 kinases in HCV has been extensively investigated. Whether the PI4P phosphatase Sac1 is altered by HCV remains unclear. Here, we identified ARFGAP1 to be a novel host factor for HCV replication. We further show that Sac1 interacts with ARFGAP1 and inhibits HCV replication. The elevation of PI4P induced by HCV NS5A is abrogated when the coatomer protein I (COPI) pathway is inhibited. We also found an interaction between NS5A and ARFGAP1. Furthermore, we identified a conserved cluster of positively charged amino acids in NS5A critical for interaction between NS5A and ARFGAP1, induction of PI4P, and HCV replication. Our data demonstrate that ARFGAP1 is a host factor for HCV RNA replication. ARFGAP1 is hijacked by HCV NS5A to remove COPI cargo Sac1 from the site of HCV replication to maintain high levels of PI4P. Our findings provide an additional mechanism by which HCV enhances formation of a PI4P-rich environment. IMPORTANCE: PI4P is enriched in the replication area of HCV; however, whether PI4P phosphatase Sac1 is subverted by HCV is not established. The detailed mechanism of how COPI contributes to viral replication remains unknown, though COPI components were hijacked by HCV. We demonstrate that ARFGAP1 is hijacked by HCV NS5A to remove COPI cargo Sac1 from the HCV replication area to maintain high-level PI4P generated by NS5A. Furthermore, we identify a conserved cluster of positively charged amino acids in NS5A, which are critical for interaction between NS5A and ARFGAP1, induction of PI4P, and HCV replication. This study will shed mechanistic insight on how other RNA viruses hijack COPI and Sac1.

Indexed as

Cell LineCellular MicroenvironmentDNA PrimersGreen Fluorescent ProteinsGTPase-Activating ProteinsHumansImmunoprecipitationMembrane ProteinsMicroscopy, FluorescencePhosphatidylinositol PhosphatesPhosphoric Monoester HydrolasesPlasmidsRNA-Dependent RNA PolymeraseRNA InterferenceRNA, Small InterferingViral Nonstructural ProteinsARFGAP1 protein, humanDNA PrimersGreen Fluorescent ProteinsGTPase-Activating ProteinsMembrane ProteinsNS-5 protein, hepatitis C virusphosphatidylinositol 4-phosphatePhosphatidylinositol PhosphatesPhosphoric Monoester HydrolasesRNA-Dependent RNA PolymeraseRNA, Small InterferingSACM1L protein, humanViral Nonstructural Proteins

Identifiers

PMID24623438
PMCPMC4093857
OpenAlexW1984646698

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.