Evidence map›Paper›PMID 24623130›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2014

Single-cell and deep sequencing of IgG-switched macaque B cells reveal a diverse Ig repertoire following immunization.

Christopher Sundling, Zhenhai Zhang, Ganesh E Phad, Zizhang Sheng, Yimeng Wang, John R Mascola, Yuxing Li, Richard T Wyatt, Lawrence Shapiro, Gunilla B Karlsson Hedestam

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 59 citations in OpenAlex.

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  12. Influenza-specific IgG1Clinical & translational immunology · 2020
    Article
  13. Review
  14. Article
  15. Article
  16. Nonhuman primate models of human viral infections.Nature reviews. Immunology · 2018
    Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 4 countries.

Christopher SundlingDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet, SE-171 77 Stockholm, Sweden;
Zhenhai Zhang
Ganesh E Phad
Zizhang Sheng
Yimeng Wang
John R Mascola
Yuxing Li
Richard T Wyatt
Lawrence Shapiro
Gunilla B Karlsson Hedestam
Karolinska Institutet · SEInstitute of Molecular Biology and Biophysics · RUScripps Research Institute · USColumbia University · USInternational AIDS Vaccine Initiative · USNational Institutes of Health · US

Funding

Support Component D/Vaccine Discovery, Concept to ClinicUM1AI100663 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI AHMED, RAFI · 2012 to 2018
$131.5M
High-resolution definition of B cell responses to HIV Env for immunogen designR01AI102766 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI LI, YUXING · 2013 to 2024
$6.6M
NIAID NIH HHS AI100663NIAID NIH HHS AI102766NIAID NIH HHS R01 AI102766NIAID NIH HHS UM1 AI100663
6 · The paper itself

Abstract

The nonhuman primate model is important for preclinical evaluation of prophylactic and therapeutic intervention strategies. The recent description of the rhesus macaque germline Ig loci and establishment of a database of germline gene segments offer improved opportunities to delineate Ig gene usage in the overall B cell repertoire as well as in response to vaccination. We applied 454-pyrosequencing and single-cell RT-PCR of bulk and sorted memory B cells, respectively, to investigate IGHV gene segment expression in rhesus macaques. The two methods gave remarkably concordant results and identified groups of gene segments that are frequently or rarely used. We further examined the VH repertoire of Ag-specific memory B cells induced by immunization with recombinant HIV-1 envelope glycoproteins, an important vaccine component. We demonstrate that HIV-1 envelope glycoprotein immunization activates a highly polyclonal response composed of most of the expressed VH gene segments, illustrating the considerable genetic diversity of responding B cells following vaccination.

Indexed as

High-Throughput Nucleotide SequencingImmunoglobulin Class SwitchingSingle-Cell AnalysisAnimalsB-LymphocytesHIV-1HIV AntibodiesImmunizationImmunoglobulin GImmunoglobulin Heavy ChainsImmunoglobulinsImmunoglobulin Variable RegionImmunologic MemoryMacaca mulattaMolecular Sequence DataHIV AntibodiesImmunoglobulin GImmunoglobulin Heavy ChainsImmunoglobulinsImmunoglobulin Variable Region

Identifiers

PMID24623130
PMCPMC3993955
OpenAlexW2148596746

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.