Evidence map›Paper›PMID 24619164›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2014

Fine mapping and candidate gene analysis of the novel thermo-sensitive genic male sterility tms9-1 gene in rice.

Yongbin Qi, Qinglong Liu, Lin Zhang, Bizeng Mao, Dawei Yan, Qingsheng Jin, Zuhua He

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

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37citing papers in PubMed
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3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Review
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  7. Article
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  10. qCTB7 positively regulates cold tolerance at booting stage in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  11. Article
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  14. Identification and fine mapping ofPlant diversity · 2022
    Article
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  19. Review
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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Yongbin QiCollege of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, Zhejiang, China.
Qinglong Liu
Lin Zhang
Bizeng Mao
Dawei Yan
Qingsheng Jin
Zuhua He

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageFine mapping of the novel thermo-sensitive genic male sterility locus tms9 - 1 in the traditional TGMS line HengnongS-1 revealed that the MALE STERILITY1 homolog OsMS1 is the candidate gene. Photoperiod-thermo-sensitive genic male sterility (P/TGMS) has been widely used in the two-line hybrid rice breeding system. HengnongS-1 is one of the oldest TGMS lines and is often used in indica two-line breeding programs in China. In this study, our genetic analysis showed that the TGMS gene in HengnongS-1 was controlled by a single recessive gene that was non-allelic with the other TGMS loci identified, including C815S, Zhu1S and Y58S. Using SSR markers and bulked segregant analysis, we located the TGMS locus on chromosome 9 and named the gene tms9-1. Fine mapping further narrowed the tms9-1 loci to a 162 kb interval between two dCAPS markers. Sequence analysis revealed that a T to C substitution results in an amino acid change in the tms9-1 candidate gene (Os09g27620) in HengnongS-1 as compared to Minghui63. Sequencing of other rice accessions, including six P/TGMS lines, seven indica varieties and nine japonica varieties, showed that this SNP was exclusive to HengnongS-1. With multiple sequence alignment and expression pattern analyses, the rice MALE STERILITY1 homolog OsMS1 gene was identified as the candidate gene for tms9-1. Therefore, our study identified a novel TGMS locus and will facilitate the functional identification of the tms9-1 gene. Moreover, the markers linked to the tms9-1 gene will provide useful tools for the development of new TGMS lines by marker-assisted selection in two-line hybrid rice breeding programs.

Indexed as

Genes, PlantTemperatureChromosome MappingGenetic Association StudiesHybridization, GeneticOryzaPlant Infertility

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