Evidence map›Paper›PMID 24618820›Full record

ArticlePloS one2014

Genetics of PICALM expression and Alzheimer's disease.

Ishita Parikh, David W Fardo, Steven Estus

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 2 pooled it
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 2 syntheses or guidelines pooled it, 69 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
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  13. Expression ofGenes · 2023
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  18. CALM supports clathrin-coated vesicle completion upon membrane tension increase.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ishita ParikhSanders-Brown Center on Aging, Department of Physiology, University of Kentucky, Lexington, Kentucky, United States of America.
David W FardoSanders-Brown Center on Aging, Department of Biostatistics, University of Kentucky, Lexington, Kentucky, United States of America.
Steven EstusSanders-Brown Center on Aging, Department of Physiology, University of Kentucky, Lexington, Kentucky, United States of America.
University of Kentucky · US

Funding

University of Kentucky Alzheimer's Disease Core Center - Biomarker CoreP30AG028383 · NIA · UNIVERSITY OF KENTUCKY · PI SCHMITT, FREDERICK · 2006 to 2020
$23.3M
TRANSGENIC MOUSE COREP01AG030128 · NIA · UNIVERSITY OF ILLINOIS AT CHICAGO · PI BU, GUOJUN · 2009 to 2013
$9.4M
Translating CD33 genetic mechanism into a novel Alzheimers therapeuticR01AG045775 · NIA · UNIVERSITY OF KENTUCKY · PI ESTUS, STEVEN · 2014 to 2017
$1.2M
Statistical Genetics Methods for Mixed PathologiesK25AG043546 · NIA · UNIVERSITY OF KENTUCKY · PI FARDO, DAVID WILLIAM · 2013 to 2015
$445k
NIA NIH HHS K25 AG043546NIA NIH HHS K25-AG043546NIA NIH HHS P01 AG030128NIA NIH HHS P01-AG030128NIA NIH HHS P30 AG028383NIA NIH HHS P30-AG028383NIA NIH HHS R01 AG045775
6 · The paper itself

Abstract

Novel Alzheimer's disease (AD) risk factors have been identified by genome-wide association studies. Elucidating the mechanism underlying these factors is critical to the validation process and, by identifying rate-limiting steps in AD risk, may yield novel therapeutic targets. Here, we evaluated the association between the AD-associated polymorphism rs3851179 near PICALM, which encodes a clathrin-coated pit accessory protein. Immunostaining established that PICALM is expressed predominately in microvessels in human brain. Consistent with this finding, PICALM mRNA expression correlated with expression of the endothelial genes vWF and CD31. Additionally, we found that PICALM expression was modestly increased with the rs3851179A AD-protective allele. Analysis of PICALM isoforms found several isoforms lacking exons encoding elements previously identified as critical to PICALM function. Increased expression of the common isoform lacking exon 13 was also associated with the rs3851179A protective allele; this association was not apparent when this isoform was compared with total PICALM expression, indicating that the SNP is associated with total PICALM expression and not this isoform per se. Interestingly, PICALM lacking exons 2-4 was not associated with rs3851179 but was associated with rs592297, which is located in exon 5. Thus, our primary findings are that multiple PICALM isoforms are expressed in the human brain, that PICALM is robustly expressed in microvessels, and that expression of total PICALM is modestly correlated with the AD-associated SNP rs3851179. We interpret these results as suggesting that increased PICALM expression in the microvasculature may reduce AD risk.

Indexed as

Gene ExpressionAgedAged, 80 and overAllelesAlternative SplicingAlzheimer DiseaseAutopsyBrainFemaleHumansImmunohistochemistryMaleMonomeric Clathrin Assembly ProteinsPolymerase Chain ReactionPolymorphism, Single NucleotideProtein IsoformsMonomeric Clathrin Assembly ProteinsPICALM protein, humanProtein Isoforms

Identifiers

PMID24618820
PMCPMC3949918
OpenAlexW2017552913

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.