Evidence map›Paper›PMID 24618787›Full record

ArticlePloS one2014

Detection of Mycobacterium bovis in bovine and bubaline tissues using nested-PCR for TbD1.

Cristina P Araújo, Ana Luiza A R Osório, Kláudia S G Jorge, Carlos Alberto N Ramos, Antonio Francisco S Filho, Carlos Eugênio S Vidal, Eliana Roxo, Christiane Nishibe, Nalvo F Almeida, Antônio A F Júnior and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 43 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Comparison of qPCR methods for the diagnosis of bovine tuberculosis from granulomas collected at slaughterhouses.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2025
    Article
  4. Article
  5. Article
  6. Genomic analysis ofFrontiers in veterinary science · 2022
    Article
  7. Article
  8. Article
  9. Real-Time PCR Validation forFrontiers in veterinary science · 2021
    Article
  10. Article
  11. Validation of a Real-Time PCR for the Detection ofFrontiers in veterinary science · 2019
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Direct detection of Mycobacterium tuberculosis complex in bovine and bubaline tissues through nested-PCR.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Cristina P AraújoPrograma de Pós-graduação em Ciência Animal FAMEZ, UFMS, Campo Grande, MS, Brazil.
Ana Luiza A R OsórioPrograma de Pós-graduação em Ciência Animal FAMEZ, UFMS, Campo Grande, MS, Brazil.
Kláudia S G JorgePrograma de Pós-graduação em Ciência Animal FAMEZ, UFMS, Campo Grande, MS, Brazil.
Carlos Alberto N RamosBolsista DTI, CNPq, Campo Grande, MS, Brazil.
Antonio Francisco S FilhoPrograma de Pós-graduação em Ciência Animal FAMEZ, UFMS, Campo Grande, MS, Brazil.
Carlos Eugênio S VidalPPGMV, UFSM, Santa Maria, RS, Brazil.
Eliana RoxoInstituto Biológico de São Paulo, São Paulo, SP, Brazil.
Christiane NishibeFaculdade de Computação, UFMS, Campo Grande, MS, Brazil.
Nalvo F AlmeidaFaculdade de Computação, UFMS, Campo Grande, MS, Brazil.
Antônio A F JúniorLaboratório Nacional Agropecuário, Pedro Leopoldo, MG, Brazil.
Marcio R SilvaEmbrapa Gado de Leite, Juiz de Fora, MG, Brazil.
José Diomedes B NetoUFPA, Castanhal, PA, Brazil.
Valíria D CerqueiraUFPA, Castanhal, PA, Brazil.
Martín J ZumárragaInstituto de Biotecnología, Instituto Nacional de Tecnología Agropecuaria, Buenos Aires, Argentina.
Flábio R AraújoEmbrapa Gado de Corte, Campo Grande, MS, Brazil.
Universidade Federal de Mato Grosso do Sul · BRBrazilian Agricultural Research Corporation · BRInstituto Biológico · BRNational Agricultural Technology Institute · ARNational Council for Scientific and Technological Development · BRUniversidade Federal de Santa Maria · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the present study, a nested-PCR system, targeting the TbD1 region, involving the performance of conventional PCR followed by real-time PCR, was developed to detect Mycobacterium bovis in bovine/bubaline tissue homogenates. The sensitivity and specificity of the reactions were assessed with DNA samples extracted from tuberculous and non-tuberculous mycobacteria, as well as other actinomycetales species and DNA samples extracted directly from bovine and bubaline tissue homogenates. In terms of analytical sensitivity, the DNA of M. bovis AN5 was detected up to 1.56 ng with conventional PCR, 97.6 pg with real-time PCR, and 1.53 pg with nested-PCR in the reaction mixture. The nested-PCR exhibited 100% analytical specificity for M. bovis when tested with the DNA of reference strains of environmental mycobacteria and closely-related Actinomycetales. A clinical sensitivity value of 76.0% was detected with tissue samples from animals that exhibited positive results in the comparative intradermal tuberculin test (CITT), as well as from those with lesions compatible with tuberculosis (LCT) that rendered positive cultures. A clinical specificity value of 100% was detected with tissue samples from animals with CITT- results, with no visible lesions (NVL) and negative cultures. No significant differences were found between the nested-PCR and culture in terms of detecting CITT+ animals with LCT or with NVL. No significant differences were recorded in the detection of CITT- animals with NVL. However, nested-PCR detected a significantly higher number of positive animals than the culture in the group of animals exhibiting LCT with no previous records of CITT. The use of the nested-PCR assay to detect M. bovis in tissue homogenates provided a rapid diagnosis of bovine and bubaline tuberculosis.

Indexed as

Polymerase Chain ReactionAnimalsCattleDNA, BacterialMycobacterium bovisTuberculosis, BovineDNA, Bacterial

Identifiers

PMID24618787
PMCPMC3949733
OpenAlexW1995221741

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.