Evidence map›Paper›PMID 24618363›Full record

ArticleNeural development2014

Multiple conserved regulatory domains promote Fezf2 expression in the developing cerebral cortex.

Matthew J Eckler, Kathryn A Larkin, William L McKenna, Sol Katzman, Chao Guo, Robin Roque, Axel Visel, John L R Rubenstein, Bin Chen

Open access · goldAbstract read
In one paragraph

Article in Neural development, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  10. The thymus and the science of self.Seminars in immunopathology · 2021
    Review
  11. Article
  12. Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  13. Article
  14. LHX2 Interacts with the NuRD Complex and Regulates Cortical Neuron Subtype Determinants Fezf2 and Sox11.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2017
    Article
  15. Article
  16. Review
  17. Mutual regulation between Satb2 and Fezf2 promotes subcerebral projection neuron identity in the developing cerebral cortex.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  18. The timing of upper-layer neurogenesis is conferred by sequential derepression and negative feedback from deep-layer neurons.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2014
    Article
  19. Fez family transcription factors: controlling neurogenesis and cell fate in the developing mammalian nervous system.BioEssays : news and reviews in molecular, cellular and developmental biology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Matthew J Eckler
Kathryn A Larkin
William L McKenna
Sol Katzman
Chao Guo
Robin Roque
Axel Visel
John L R Rubenstein
Bin ChenDepartment of Molecular, Cell and Developmental Biology, University of California, Santa Cruz, CA, USA. bchen@ucsc.edu.
University of California, Santa Cruz · USLawrence Berkeley National Laboratory · USUniversity of California, San Francisco · US

Funding

Generation of an In Vivo Human Genome Transcriptional Enhancer DatasetR01HG003988 · NHGRI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Len Alexander Pennacchio · 2006 to 2026
$24.1M
Genetic Studies of Cortex Structure and DevelopmentR01NS099099 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI RUBENSTEIN, JOHN L. R. · 2016 to 2025
$6.4M
GENETIC STUDIES OF CORTEX STRUCTURE AND DEVELOPMENTR01NS034661 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI RUBENSTEIN, JOHN L. R. · 1996 to 2015
$4.6M
Transcriptional regulation of neuronal identity and connectivityR01MH094589 · NIMH · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI CHEN, BIN · 2011 to 2021
$3.7M
NHGRI NIH HHS R01HG003988NIMH NIH HHS R01 MH094589NINDS NIH HHS R01 NS034661NINDS NIH HHS R01NS062859ANINDS NIH HHS R01 NS099099
6 · The paper itself

Abstract

backgroundThe genetic programs required for development of the cerebral cortex are under intense investigation. However, non-coding DNA elements that control the expression of developmentally important genes remain poorly defined. Here we investigate the regulation of Fezf2, a transcription factor that is necessary for the generation of deep-layer cortical projection neurons.

resultsUsing a combination of chromatin immunoprecipitation followed by high throughput sequencing (ChIP-seq) we mapped the binding of four deep-layer-enriched transcription factors previously shown to be important for cortical development. Building upon this we characterized the activity of three regulatory regions around the Fezf2 locus at multiple stages throughout corticogenesis. We identified a promoter that was sufficient for expression in the cerebral cortex, and enhancers that drove reporter gene expression in distinct forebrain domains, including progenitor cells and cortical projection neurons.

conclusionsThese results provide insight into the regulatory logic controlling Fezf2 expression and further the understanding of how multiple non-coding regulatory domains can collaborate to control gene expression in vivo.

Indexed as

Regulatory Elements, TranscriptionalAnimalsCerebral CortexDNA-Binding ProteinsEnhancer Elements, GeneticMiceMice, TransgenicNerve Tissue ProteinsDNA-Binding ProteinsNerve Tissue ProteinsZfp312 protein, mouse

Identifiers

PMID24618363
PMCPMC4008173
OpenAlexW2153518972

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.