Evidence map›Paper›PMID 24616579›Full record

ArticleJournal of Korean medical science2014

Recent trends of antigenic variation in Bordetella pertussis isolates in Korea.

So-Hyun Kim, Jin Lee, Hwa Young Sung, Jae Yon Yu, Seong Han Kim, Mi Sun Park, Sang-Oun Jung

Open access · goldAbstract read
In one paragraph

Article in Journal of Korean medical science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. A systematic review of the burden of pertussis in South Korea.Human vaccines & immunotherapeutics · 2021
    Pooled it
  2. Review
  3. Article
  4. Genomic characterization ofMicrobial genomics · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. [Antimicrobial susceptibility and antigen genotypes of Bordetella pertussis strains isolated from neonates].Zhongguo dang dai er ke za zhi = Chinese journal of contemporary pediatrics · 2019
    Article
  9. Bordetella pertussis: new concepts in pathogenesis and treatment.Current opinion in infectious diseases · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

So-Hyun KimDivision of Bacterial Respiratory Infections, Korea National Institute of Health, Osong, Korea.
Jin LeeDivision of Bacterial Respiratory Infections, Korea National Institute of Health, Osong, Korea.
Hwa Young SungPathogen Resource TF, Korea National Institute of Health, Osong, Korea.
Jae Yon YuDivision of Antimicrobial Resistance, Korea National Institute of Health, Osong, Korea.
Seong Han KimDivision of Bacterial Respiratory Infections, Korea National Institute of Health, Osong, Korea.
Mi Sun ParkDivision of Bacterial Respiratory Infections, Korea National Institute of Health, Osong, Korea.
Sang-Oun JungDivision of Bacterial Respiratory Infections, Korea National Institute of Health, Osong, Korea.
Korea National Institute of Health · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pertussis is a representative vaccine-preventable disease. However, there have been recent outbreaks in countries where even higher vaccination against the disease. One reason is the emergence of antigenic variants, which are different to vaccine type. In Korea, reported cases have rapidly increased since 2009. Therefore, we analyzed genotype of strains isolated in 2011-2012 by multilocus sequence typing method. As expected, the genotype profiles of tested genes dramatically changed. The major sequence type changed from ST1 to ST2, and new sequence type (ST8) appeared. In the minimum spanning tree, recent isolates belonging to the ACC-I-ST3 subgroup were detected that were composed of ST2, ST3, and ST6. In particular, the ST2 frequency increased to 81%. The novel ST8 was linked to the increased frequency of ST2. In addition, toxic strains carrying the ptxP3 promoter type were confirmed. This ptxP3 type emerged from 2009 and its frequency had increased to 100% in 2012. Based on these results, it can be inferred that the genotypic changes in the currently circulating strains are strongly associated with the recent increasing of pertussis in Korea. Therefore, the surveillance system should be strengthened, and genetic characterization of the isolates should be expanded to the whole genome sequence level.

Indexed as

Antigenic VariationAntigensBacterial ProteinsBordetella pertussisGenes, BacterialGenotypeHumansPertussis ToxinPromoter Regions, GeneticRepublic of KoreaSequence Analysis, DNAWhooping CoughAntigensBacterial ProteinsPertussis ToxinAntigenic VariationBordetella pertussisMinimum Spanning TreeMultilocus Sequence TypingPertussis ToxinPertussis Vaccine

Identifiers

PMID24616579
PMCPMC3945125
OpenAlexW2005903868

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.