Evidence map›Paper›PMID 24613822›Full record

ArticleThe Journal of molecular diagnostics : JMD2014

HIV viral RNA extraction in wax immiscible filtration assisted by surface tension (IFAST) devices.

Scott M Berry, Alex J LaVanway, Hannah M Pezzi, David J Guckenberger, Meghan A Anderson, Jennifer M Loeb, David J Beebe

Open access · bronzeAbstract readEvaluation Study
In one paragraph

Article in The Journal of molecular diagnostics : JMD, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

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  16. Molecular oncology testing in resource-limited settings.The Journal of molecular diagnostics : JMD · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Scott M BerryDepartment of Biomedical Engineering, University of Wisconsin-Madison, Madison, Wisconsin. Electronic address: berry3@wisc.edu.
Alex J LaVanwayDepartment of Biomedical Engineering, University of Wisconsin-Madison, Madison, Wisconsin.
Hannah M PezziDepartment of Biomedical Engineering, University of Wisconsin-Madison, Madison, Wisconsin.
David J GuckenbergerDepartment of Biomedical Engineering, University of Wisconsin-Madison, Madison, Wisconsin.
Meghan A AndersonDepartment of Biomedical Engineering, University of Wisconsin-Madison, Madison, Wisconsin.
Jennifer M LoebDepartment of Biomedical Engineering, University of Wisconsin-Madison, Madison, Wisconsin.
David J BeebeDepartment of Biomedical Engineering, University of Wisconsin-Madison, Madison, Wisconsin.
University of Wisconsin–Madison · US

Funding

Integrated Micro Scale transcriptional profiling of cell communication networksR33CA160344 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI ALARID, ELAINE T, BEEBE, DAVID J · 2011 to 2013
$818k
NCI NIH HHS R33 CA160344NCI NIH HHS R33CA160344
6 · The paper itself

Abstract

The monitoring of viral load is critical for proper management of antiretroviral therapy for HIV-positive patients. Unfortunately, in the developing world, significant economic and geographical barriers exist, limiting access to this test. The complexity of current viral load assays makes them expensive and their access limited to advanced facilities. We attempted to address these limitations by replacing conventional RNA extraction, one of the essential processes in viral load quantitation, with a simplified technique known as immiscible filtration assisted by surface tension (IFAST). Furthermore, these devices were produced via the embossing of wax, enabling local populations to produce and dispose of their own devices with minimal training or infrastructure, potentially reducing the total assay cost. In addition, IFAST can be used to reduce cold chain dependence during transportation. Viral RNA extracted from raw samples stored at 37°C for 1 week exhibited nearly complete degradation. However, IFAST-purified RNA could be stored at 37°C for 1 week without significant loss. These data suggest that RNA isolated at the point of care (eg, in a rural clinic) via IFAST could be shipped to a central laboratory for quantitative RT-PCR without a cold chain. Using this technology, we have demonstrated accurate and repeatable measurements of viral load on samples with as low as 50 copies per milliliter of sample.

Indexed as

Base SequenceEquipment DesignFiltrationHIVHIV InfectionsHumansLimit of DetectionReverse Transcriptase Polymerase Chain ReactionRNA, ViralSurface TensionViral LoadRNA, Viral

Identifiers

PMID24613822
PMCPMC4715211
OpenAlexW2018934981

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.