Evidence map›Paper›PMID 24613343›Full record

ArticleMolecular cell2014

Oct-1 regulates IL-17 expression by directing interchromosomal associations in conjunction with CTCF in T cells.

Lark Kyun Kim, Enric Esplugues, Cornelia E Zorca, Fabio Parisi, Yuval Kluger, Tae Hoon Kim, Niels J Galjart, Richard A Flavell

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 50 citations in OpenAlex.

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  6. The absence of AhR in CD4Clinical epigenetics · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Lark Kyun KimDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT 06520, USA; Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06520, USA.
Enric EspluguesDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT 06520, USA.
Cornelia E ZorcaDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT 06520, USA; Department of Genetics, Yale University School of Medicine, New Haven, CT 06520, USA.
Fabio ParisiDepartment of Pathology, Yale University School of Medicine, New Haven, CT 06520, USA.
Yuval KlugerDepartment of Pathology, Yale University School of Medicine, New Haven, CT 06520, USA.
Tae Hoon KimDepartment of Genetics, Yale University School of Medicine, New Haven, CT 06520, USA.
Niels J GaljartDepartment of Cell Biology and Genetics, Erasmus MC, 3000 CA Rotterdam, the Netherlands.
Richard A FlavellDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT 06520, USA; Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06520, USA. Electronic address: richard.flavell@yale.edu.
Yale University · USErasmus University Rotterdam · NL

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007499 · NIGMS · YALE UNIVERSITY · PI CARLSON, JOHN R, REINKE, VALERIE J · 1985 to 2022
$13.9M
Analysis of Higher Order Chromatin Structures in Normal and Cancer EpigenomesR01CA140485 · NCI · YALE UNIVERSITY · PI KIM, TAE HOON · 2010 to 2014
$1.6M
Nuclear, Genomic and Molecular Regulation of Type I Interferon TranscriptionR21AI107067 · NIAID · YALE UNIVERSITY · PI KIM, TAE HOON · 2013 to 2014
$426k
Howard Hughes Medical InstituteNCI NIH HHS R01 CA140485NIAID NIH HHS R21 AI107067NIGMS NIH HHS T32 GM007499NIGMS NIH HHS T32-GM07499
6 · The paper itself

Abstract

Interchromosomal associations can regulate gene expression, but little is known about the molecular basis of such associations. In response to antigen stimulation, naive T cells can differentiate into Th1, Th2, and Th17 cells expressing IFN-γ, IL-4, and IL-17, respectively. We previously reported that in naive T cells, the IFN-γ locus is associated with the Th2 cytokine locus. Here we show that the Th2 locus additionally associates with the IL-17 locus. This association requires a DNase I hypersensitive region (RHS6) at the Th2 locus. RHS6 and the IL-17 promoter both bear Oct-1 binding sites. Deletion of either of these sites or Oct-1 gene impairs the association. Oct-1 and CTCF bind their cognate sites cooperatively, and CTCF deficiency similarly impairs the association. Finally, defects in the association lead to enhanced IL-17 induction. Collectively, our data indicate Th17 lineage differentiation is restrained by the Th2 locus via interchromosomal associations organized by Oct-1 and CTCF.

Indexed as

Chromosomes, MammalianAnimalsBinding SitesCCCTC-Binding FactorCell DifferentiationCell LineageCells, CulturedDeoxyribonuclease IGene Expression RegulationGenes, ReporterGenetic LociGreen Fluorescent ProteinsInterleukin-17MiceMice, Inbred C57BLMice, KnockoutCCCTC-Binding FactorCtcf protein, mouseDeoxyribonuclease IGreen Fluorescent ProteinsIl17a protein, mouseInterleukin-17Octamer Transcription Factor-1Pou2f1 protein, mouseRepressor Proteins

Identifiers

PMID24613343
PMCPMC4058095
OpenAlexW1979353111

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.