Evidence map›Paper›PMID 24610810›Full record

ArticleThe Journal of biological chemistry2014

Identification and functional characterization of a novel bacterial type asparagine synthetase A: a tRNA synthetase paralog from Leishmania donovani.

Reetika Manhas, Pankaj Tripathi, Sameena Khan, Bhavana Sethu Lakshmi, Shambhu Krishan Lal, Venkatraman Subramanian Gowri, Amit Sharma, Rentala Madhubala

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Glutamine metabolic enzymes: to filament or not to filament?Biochemical Society transactions · 2026
    Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
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  10. L-Asparaginase of Leishmania donovani: Metabolic target and its role in Amphotericin B resistance.International journal for parasitology. Drugs and drug resistance · 2017
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Reetika ManhasSchool of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India.
Pankaj TripathiSchool of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India.
Sameena KhanStructural and Computational Biology Group, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India.
Bhavana Sethu LakshmiSchool of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India.
Shambhu Krishan LalSchool of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India.
Venkatraman Subramanian GowriSchool of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India.
Amit SharmaStructural and Computational Biology Group, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India.
Rentala MadhubalaSchool of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India. Electronic address: rentala@outlook.com.
Jawaharlal Nehru University · INInternational Centre for Genetic Engineering and Biotechnology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Asparagine is formed by two structurally distinct asparagine synthetases in prokaryotes. One is the ammonia-utilizing asparagine synthetase A (AsnA), and the other is asparagine synthetase B (AsnB) that uses glutamine or ammonia as a nitrogen source. In a previous investigation using sequence-based analysis, we had shown that Leishmania spp. possess asparagine-tRNA synthetase paralog asparagine synthetase A (LdASNA) that is ammonia-dependent. Here, we report the cloning, expression, and kinetic analysis of ASNA from Leishmania donovani. Interestingly, LdASNA was both ammonia- and glutamine-dependent. To study the physiological role of ASNA in Leishmania, gene deletion mutations were attempted via targeted gene replacement. Gene deletion of LdASNA showed a growth delay in mutants. However, chromosomal null mutants of LdASNA could not be obtained as the double transfectant mutants showed aneuploidy. These data suggest that LdASNA is essential for survival of the Leishmania parasite. LdASNA enzyme was recalcitrant toward crystallization so we instead crystallized and solved the atomic structure of its close homolog from Trypanosoma brucei (TbASNA) at 2.2 Å. A very significant conservation in active site residues is observed between TbASNA and Escherichia coli AsnA. It is evident that the absence of an LdASNA homolog from humans and its essentiality for the parasites make LdASNA a novel drug target.

Indexed as

Amino Acid SequenceAmino Acyl-tRNA SynthetasesAnimalsAspartate-Ammonia LigaseBacteriaBase SequenceDNA PrimersLeishmania donovaniMicroscopy, ConfocalModels, MolecularMolecular Sequence DataSequence Homology, Amino AcidSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationSubcellular FractionsAmino Acyl-tRNA SynthetasesAspartate-Ammonia LigaseDNA PrimersAminoacyl-tRNA SynthetaseDrug DesignDrug DevelopmentDrug DiscoveryDrug ResistanceLeishmaniaLeishmania, Drug TargetParasite

Identifiers

PMID24610810
PMCPMC4002115
OpenAlexW2020086896

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.