Evidence map›Paper›PMID 24609384›Full record

ArticleNucleic acids research2014

Myc-induced anchorage of the rDNA IGS region to nucleolar matrix modulates growth-stimulated changes in higher-order rDNA architecture.

Chiou-Nan Shiue, Amir Nematollahi-Mahani, Anthony P H Wright

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Nucleolus and chromatin.Histochemistry and cell biology · 2018
    Review
  10. Article
  11. Article
  12. Article
  13. Reproduction of the FC/DFC units in nucleoli.Nucleus (Austin, Tex.) · 2016
    Article
  14. Nucleolar DNA: the host and the guests.Histochemistry and cell biology · 2016
    Review
  15. Nuclear PI3K signaling in cell growth and tumorigenesis.Frontiers in cell and developmental biology · 2015
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Chiou-Nan ShiueClinical Research Center (KFC), Department of Laboratory Medicine and Center for Biosciences, Karolinska Institute, SE-141 86 Huddinge, Sweden.
Amir Nematollahi-MahaniClinical Research Center (KFC), Department of Laboratory Medicine and Center for Biosciences, Karolinska Institute, SE-141 86 Huddinge, Sweden.
Anthony P H WrightClinical Research Center (KFC), Department of Laboratory Medicine and Center for Biosciences, Karolinska Institute, SE-141 86 Huddinge, Sweden anthony.wright@ki.se.
Karolinska Institutet · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromatin domain organization and the compartmentalized distribution of chromosomal regions are essential for packaging of deoxyribonucleic acid (DNA) in the eukaryotic nucleus as well as regulated gene expression. Nucleoli are the most prominent morphological structures of cell nuclei and nucleolar organization is coupled to cell growth. It has been shown that nuclear scaffold/matrix attachment regions often define the base of looped chromosomal domains in vivo and that they are thereby critical for correct chromosome architecture and gene expression. Here, we show regulated organization of mammalian ribosomal ribonucleic acid genes into distinct chromatin loops by tethering to nucleolar matrix via the non-transcribed inter-genic spacer region of the ribosomal DNA (rDNA). The rDNA gene loop structures are induced specifically upon growth stimulation and are dependent on the activity of the c-Myc protein. Matrix-attached rDNA genes are hypomethylated at the promoter and are thus available for transcriptional activation. rDNA genes silenced by methylation are not recruited to the matrix. c-Myc, which has been shown to induce rDNA transcription directly, is physically associated with rDNA gene looping structures and the intergenic spacer sequence in growing cells. Such a role of Myc proteins in gene activation has not been reported previously.

Indexed as

AnimalsCell NucleolusCell ProliferationChromatin Assembly and DisassemblyDNA, Ribosomal SpacerEpigenesis, GeneticHEK293 CellsHeLa CellsHumansNucleic Acid ConformationProto-Oncogene Proteins c-mycRatsDNA, Ribosomal SpacerMYC protein, humanProto-Oncogene Proteins c-myc

Identifiers

PMID24609384
PMCPMC4027186
OpenAlexW2098909371

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.