Evidence map›Paper›PMID 24609083›Full record

ArticlePloS one2014

Circular RNA is expressed across the eukaryotic tree of life.

Peter L Wang, Yun Bao, Muh-Ching Yee, Steven P Barrett, Gregory J Hogan, Mari N Olsen, José R Dinneny, Patrick O Brown, Julia Salzman

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 457 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
457citing papers in PubMed, 1 pooled it
21.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

457 citing papers in PubMed, 1 synthesis or guideline pooled it, 804 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. CircRNACells · 2026
    Article
  9. Review
  10. Circular RNAs: from transcriptional noise to engineered therapeutics.Frontiers in epigenetics and epigenomics · 2026
    Review
  11. Article
  12. Article
  13. Review
  14. Roles and Applications of Circular RNA in Virus Infection.International journal of molecular sciences · 2025
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

397 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Peter L WangDepartment of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America; Stanford Cancer Institute, Stanford University School of Medicine, Stanford, California, United States of America.
Yun BaoDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America; Temasek Lifesciences Laboratory, National University of Singapore, Singapore, Singapore; Department of Biological Sciences, National University of Singapore, Singapore, Singapore.
Muh-Ching YeeDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America; Temasek Lifesciences Laboratory, National University of Singapore, Singapore, Singapore; Department of Biological Sciences, National University of Singapore, Singapore, Singapore.
Steven P BarrettDepartment of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America.
Gregory J HoganDepartment of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America.
Mari N OlsenDepartment of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America; Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, California, United States of America.
José R DinnenyDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America; Temasek Lifesciences Laboratory, National University of Singapore, Singapore, Singapore; Department of Biological Sciences, National University of Singapore, Singapore, Singapore.
Patrick O BrownDepartment of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America; Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, California, United States of America.
Julia SalzmanDepartment of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America; Stanford Cancer Institute, Stanford University School of Medicine, Stanford, California, United States of America.
Stanford University · USHoward Hughes Medical Institute · USTemasek Life Sciences Laboratory · SGCarnegie Institution for Science · US

Funding

Discovering genomic rearrangements under selection in serious ovarian cancerR00CA168987 · NCI · STANFORD UNIVERSITY · PI SALZMAN, JULIA · 2014 to 2016
$704k
Discovering genomic rearrangements under selection in serious ovarian cancerK99CA168987 · NCI · STANFORD UNIVERSITY · PI SALZMAN, JULIA · 2012 to 2012
$110k
Howard Hughes Medical InstituteNCI NIH HHS K99 CA168987NCI NIH HHS NIH NCI 1K99CA168987-01NCI NIH HHS R00 CA168987
6 · The paper itself

Abstract

An unexpectedly large fraction of genes in metazoans (human, mouse, zebrafish, worm, fruit fly) express high levels of circularized RNAs containing canonical exons. Here we report that circular RNA isoforms are found in diverse species whose most recent common ancestor existed more than one billion years ago: fungi (Schizosaccharomyces pombe and Saccharomyces cerevisiae), a plant (Arabidopsis thaliana), and protists (Plasmodium falciparum and Dictyostelium discoideum). For all species studied to date, including those in this report, only a small fraction of the theoretically possible circular RNA isoforms from a given gene are actually observed. Unlike metazoans, Arabidopsis, D. discoideum, P. falciparum, S. cerevisiae, and S. pombe have very short introns (∼ 100 nucleotides or shorter), yet they still produce circular RNAs. A minority of genes in S. pombe and P. falciparum have documented examples of canonical alternative splicing, making it unlikely that all circular RNAs are by-products of alternative splicing or 'piggyback' on signals used in alternative RNA processing. In S. pombe, the relative abundance of circular to linear transcript isoforms changed in a gene-specific pattern during nitrogen starvation. Circular RNA may be an ancient, conserved feature of eukaryotic gene expression programs.

Indexed as

AnimalsArabidopsisDictyosteliumHumansMolecular Sequence AnnotationPlasmodium falciparumRNARNA, CircularRNA, FungalRNA, PlantRNA, ProtozoanSaccharomyces cerevisiaeSchizosaccharomycesSequence Analysis, RNARNARNA, CircularRNA, FungalRNA, PlantRNA, Protozoan

Identifiers

PMID24609083
PMCPMC3946582
OpenAlexW2086055453

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.