Evidence map›Paper›PMID 24608968›Full record

ArticleMarine drugs2014

Structural studies of the lipopolysaccharide from the fish pathogen Aeromonas veronii strain Bs19, serotype O16.

Anna Turska-Szewczuk, Katarzyna A Duda, Dominik Schwudke, Agnieszka Pekala, Alicja Kozinska, Otto Holst

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Marine drugs, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Evaluation of Proteomic and Lipidomic Changes inInternational journal of molecular sciences · 2022
    Article
  4. Surface Glucan Structures inMarine drugs · 2021
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Anna Turska-SzewczukDepartment of Genetics and Microbiology, M. Curie-Sklodowska University, Akademicka 19, Lublin 20-033, Poland. aturska@hektor.umcs.lublin.pl.
Katarzyna A DudaDivision of Structural Biochemistry, Research Center Borstel, Leibniz-Center for Medicine and Biosciences, Parkallee 4a/c, Borstel D-23845, Germany. kduda@fz-borstel.de.
Dominik SchwudkeDivision of Bioanalytical Chemistry, Research Center Borstel, Leibniz-Center for Medicine and Biosciences, Parkallee 10, Borstel D-23845, Germany. dschwudke@fz-borstel.de.
Agnieszka PekalaDepartment of Fish Diseases, National Veterinary Research Institute, Partyzantow 57, Pulawy 24-100, Poland. a.pekala@piwet.pulawy.pl.
Alicja KozinskaDepartment of Fish Diseases, National Veterinary Research Institute, Partyzantow 57, Pulawy 24-100, Poland. koala@piwet.pulawy.pl.
Otto HolstDivision of Structural Biochemistry, Research Center Borstel, Leibniz-Center for Medicine and Biosciences, Parkallee 4a/c, Borstel D-23845, Germany. oholst@fz-borstel.de.
Research Center Borstel - Leibniz Lung Center · DENational Veterinary Research Institute · PLMaria Curie-Skłodowska University · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chemical analyses, mass spectrometry, and NMR spectroscopy were applied to study the structure of the lipopolysaccharide (LPS) isolated from Aeromonas veronii strain Bs19, serotype O16. ESI-MS revealed that the most abundant LPS glycoforms have tetra-acylated or hexa-acylated lipid A species, consisting of a bisphosphorylated GlcN disaccharide with an AraN residue as a non-stoichiometric substituent, and a core oligosaccharide composed of Hep₅Hex₃HexN₁Kdo₁P₁. Sugar and methylation analysis together with 1D and 2D ¹H and ¹³C NMR spectroscopy were the main methods used, and revealed that the O-specific polysaccharide (OPS) of A. veronii Bs19 was built up of tetrasaccharide repeating units with the structure: →4)-α-D-Quip3NAc-(1→3)-α-L-Rhap-(1→4)-β-D-Galp-(1→3)-α-D-GalpNAc-(1→. This composition was confirmed by mass spectrometry. The charge-deconvoluted ESI FT-ICR MS recorded for the LPS preparations identified mass peaks of SR- and R-form LPS species, that differed by Δm = 698.27 u, a value corresponding to the calculated molecular mass of one OPS repeating unit (6dHexNAc6dHexHexHexNAc-H₂O). Moreover, unspecific fragmentation spectra confirmed the sequence of the sugar residues in the OPS and allowed to assume that the elucidated structure also represented the biological repeating unit.

Indexed as

AeromonasAlgorithmsAnimalsCarbohydrate SequenceCarpsCulture MediaElectrophoresis, Polyacrylamide GelFish DiseasesFishesGas Chromatography-Mass SpectrometryLipopolysaccharidesMolecular Sequence DataSilver StainingSkin UlcerSpectrometry, Mass, Electrospray IonizationCulture MediaLipopolysaccharides

Identifiers

PMID24608968
PMCPMC3967211
OpenAlexW2086006630

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.